Integrating fossil observations into phylogenetics using the fossilized birth–death model

AM Wright, DW Bapst, J Barido-Sottani… - Annual Review of …, 2022 - annualreviews.org
Over the past decade, a new set of methods for estimating dated trees has emerged.
Originally referred to as the fossilized birth–death (FBD) process, this single model has …

Fossils improve phylogenetic analyses of morphological characters

N Mongiardino Koch… - Proceedings of the …, 2021 - royalsocietypublishing.org
Fossils provide our only direct window into evolutionary events in the distant past.
Incorporating them into phylogenetic hypotheses of living clades can help time-calibrate …

Assessing the Adequacy of Morphological Models using posterior predictive simulations

LPA Mulvey, MR May, JM Brown, S Höhna… - Systematic …, 2024 - academic.oup.com
Reconstructing the evolutionary history of different groups of organisms provides insight into
how life originated and diversified on Earth. Phylogenetic trees are commonly used to …

Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates

TR Simões, MW Caldwell, SE Pierce - BMC biology, 2020 - Springer
Background The vast majority of all life that ever existed on earth is now extinct and several
aspects of their evolutionary history can only be assessed by using morphological data from …

Convergent adaptation of true crabs (Decapoda: Brachyura) to a gradient of terrestrial environments

JM Wolfe, L Ballou, J Luque, VM Watson-Zink… - Systematic …, 2024 - academic.oup.com
For much of terrestrial biodiversity, the evolutionary pathways of adaptation from marine
ancestors are poorly understood and have usually been viewed as a binary trait. True crabs …

Handling logical character dependency in phylogenetic inference: extensive performance testing of assumptions and solutions using simulated and empirical data

TR Simões, OV Vernygora, BAS de Medeiros… - Systematic …, 2023 - academic.oup.com
Logical character dependency is a major conceptual and methodological problem in
phylogenetic inference of morphological data sets, as it violates the assumption of character …

Combining palaeontological and neontological data shows a delayed diversification burst of carcharhiniform sharks likely mediated by environmental change

B Brée, FL Condamine, G Guinot - Scientific Reports, 2022 - nature.com
Estimating deep-time species-level diversification processes remains challenging. Both the
fossil record and molecular phylogenies allow the estimation of speciation and extinction …

[图书][B] Mesozoic mammals from South America and their forerunners

GW Rougier, AG Martinelli, AM Forasiepi - 2021 - Springer
As evolutionary biologists, we live in exciting and promising times. The material basis of our
science is growing at an unprecedented rate; fossils preserving structures we thought …

Early cephalopod evolution clarified through Bayesian phylogenetic inference

A Pohle, B Kröger, RCM Warnock, AH King, DH Evans… - BMC biology, 2022 - Springer
Background Despite the excellent fossil record of cephalopods, their early evolution is
poorly understood. Different, partly incompatible phylogenetic hypotheses have been …

Evolution and systematics of the Aculeata and kin (Hymenoptera), with emphasis on the ants (Formicoidea:†@@@ idae fam. nov., Formicidae)

BE Boudinot, Z Khouri, A Richter, ZH Griebenow… - BioRxiv, 2022 - biorxiv.org
Fossils provide unique opportunity to understand the tempo and mode of evolution and are
essential for modeling the history of lineage diversification. Here, we interrogate the …