Genome-scale metabolic network models for industrial microorganisms metabolic engineering: current advances and future prospects
Z Gong, J Chen, X Jiao, H Gong, D Pan, L Liu… - Biotechnology …, 2024 - Elsevier
The construction of high-performance microbial cell factories (MCFs) is the centerpiece of
biomanufacturing. However, the complex metabolic regulatory network of microorganisms …
biomanufacturing. However, the complex metabolic regulatory network of microorganisms …
State-of the-art constraint-based modeling of microbial metabolism: from basics to context-specific models with a focus on methanotrophs
MA Kulyashov, SK Kolmykov, TM Khlebodarova… - Microorganisms, 2023 - mdpi.com
Methanotrophy is the ability of an organism to capture and utilize the greenhouse gas,
methane, as a source of energy-rich carbon. Over the years, significant progress has been …
methane, as a source of energy-rich carbon. Over the years, significant progress has been …
[HTML][HTML] ECMpy 2.0: A Python package for automated construction and analysis of enzyme-constrained models
Genome-scale metabolic models (GEMs) have been widely employed to predict
microorganism behaviors. However, GEMs only consider stoichiometric constraints, leading …
microorganism behaviors. However, GEMs only consider stoichiometric constraints, leading …
[HTML][HTML] Reconstruction and metabolic profiling of the genome-scale metabolic network model of pseudomonas stutzeri a1501
Pseudomonas stutzeri A1501 is a non-fluorescent denitrifying bacteria that belongs to the
gram-negative bacterial group. As a prominent strain in the fields of agriculture and …
gram-negative bacterial group. As a prominent strain in the fields of agriculture and …
Systems metabolic engineering of Corynebacterium glutamicum to assimilate formic acid for biomass accumulation and succinic acid production
K Li, X Zhang, C Li, YC Liang, XQ Zhao, CG Liu… - Bioresource …, 2024 - Elsevier
Formate as an ideal mediator between the physicochemical and biological realms can be
obtained from electrochemical reduction of CO 2 and used to produce bio-chemicals. Yet …
obtained from electrochemical reduction of CO 2 and used to produce bio-chemicals. Yet …
Targeting the Bottlenecks in Levan Biosynthesis Pathway in Bacillus subtilis and Strain Optimization by Computational Modeling and Omics Integration
A Immanuel, RM Yennamalli… - OMICS: A Journal of …, 2024 - liebertpub.com
Levan is a fructan polymer with many industrial applications such as the formulation of
hydrogels, drug delivery, and wound healing, among others. To this end, metabolic systems …
hydrogels, drug delivery, and wound healing, among others. To this end, metabolic systems …
Unveiling Metabolic Engineering Strategies by Quantitative Heterologous Pathway Design
Constructing efficient cell factories requires the rational design of metabolic pathways, yet
quantitatively predicting the potential pathway for breaking stoichiometric yield limit in hosts …
quantitatively predicting the potential pathway for breaking stoichiometric yield limit in hosts …
[HTML][HTML] Deciphering and designing microbial communities by genome-scale metabolic modelling
S Wu, Z Qu, D Chen, H Wu, Q Caiyin, J Qiao - Computational and Structural …, 2024 - Elsevier
Microbial communities are shaped by the complex interactions among organisms and the
environment. Genome-scale metabolic models (GEMs) can provide deeper insights into the …
environment. Genome-scale metabolic models (GEMs) can provide deeper insights into the …
[HTML][HTML] CPhaMAS: An online platform for pharmacokinetic data analysis based on optimized parameter fitting algorithm
Y Kuang, D Cao, Y Zuo, J Yuan, F Lu, Y Zou… - Computer Methods and …, 2024 - Elsevier
Background and objective Clinical pharmacological modeling and statistical analysis
software is an essential basic tool for drug development and personalized drug therapy. The …
software is an essential basic tool for drug development and personalized drug therapy. The …
Unlocking the formate utilization of wild‐type Yarrowia lipolytica through adaptive laboratory evolution
Q Chen, Y Chen, Z Hou, Y Ma, J Huang… - Biotechnology …, 2024 - Wiley Online Library
Synthetic biology is contributing to the advancement of the global net‐negative carbon
economy, with emphasis on formate as a member of the one‐carbon substrate garnering …
economy, with emphasis on formate as a member of the one‐carbon substrate garnering …