[HTML][HTML] Protein–protein interaction prediction with deep learning: A comprehensive review
Most proteins perform their biological function by interacting with themselves or other
molecules. Thus, one may obtain biological insights into protein functions, disease …
molecules. Thus, one may obtain biological insights into protein functions, disease …
Open-source machine learning in computational chemistry
A Hagg, KN Kirschner - Journal of Chemical Information and …, 2023 - ACS Publications
The field of computational chemistry has seen a significant increase in the integration of
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …
Protein–protein contact prediction by geometric triangle-aware protein language models
Abstract Information regarding the residue–residue distance between interacting proteins is
important for modelling the structures of protein complexes, as well as being valuable for …
important for modelling the structures of protein complexes, as well as being valuable for …
Machine learning on protein–protein interaction prediction: models, challenges and trends
Protein–protein interactions (PPIs) carry out the cellular processes of all living organisms.
Experimental methods for PPI detection suffer from high cost and false-positive rate, hence …
Experimental methods for PPI detection suffer from high cost and false-positive rate, hence …
Unifying structural descriptors for biological and bioinspired nanoscale complexes
Biomimetic nanoparticles are known to serve as nanoscale adjuvants, enzyme mimics and
amyloid fibrillation inhibitors. Their further development requires better understanding of …
amyloid fibrillation inhibitors. Their further development requires better understanding of …
HNSPPI: a hybrid computational model combing network and sequence information for predicting protein–protein interaction
S Xie, X Xie, X Zhao, F Liu, Y Wang… - Briefings in …, 2023 - academic.oup.com
Most life activities in organisms are regulated through protein complexes, which are mainly
controlled via Protein–Protein Interactions (PPIs). Discovering new interactions between …
controlled via Protein–Protein Interactions (PPIs). Discovering new interactions between …
Recent advances in deep learning for protein-protein interaction analysis: A comprehensive review
M Lee - Molecules, 2023 - mdpi.com
Deep learning, a potent branch of artificial intelligence, is steadily leaving its transformative
imprint across multiple disciplines. Within computational biology, it is expediting progress in …
imprint across multiple disciplines. Within computational biology, it is expediting progress in …
Machine Learning Empowering Drug Discovery: Applications, Opportunities and Challenges
X Qi, Y Zhao, Z Qi, S Hou, J Chen - Molecules, 2024 - mdpi.com
Drug discovery plays a critical role in advancing human health by developing new
medications and treatments to combat diseases. How to accelerate the pace and reduce the …
medications and treatments to combat diseases. How to accelerate the pace and reduce the …
The power of computational proteomics platforms to decipher protein-protein interactions
M González-Avendaño, J López… - Current Opinion in …, 2024 - Elsevier
Adopting computational tools for analyzing extensive biological datasets has profoundly
transformed our understanding and interpretation of biological phenomena. Innovative …
transformed our understanding and interpretation of biological phenomena. Innovative …
[HTML][HTML] SpatialPPI: Three-dimensional space protein-protein interaction prediction with AlphaFold Multimer
W Hu, M Ohue - Computational and Structural Biotechnology Journal, 2024 - Elsevier
Rapid advancements in protein sequencing technology have resulted in gaps between
proteins with identified sequences and those with mapped structures. Although sequence …
proteins with identified sequences and those with mapped structures. Although sequence …