[HTML][HTML] Integration strategies of multi-omics data for machine learning analysis

M Picard, MP Scott-Boyer, A Bodein, O Périn… - Computational and …, 2021 - Elsevier
Increased availability of high-throughput technologies has generated an ever-growing
number of omics data that seek to portray many different but complementary biological …

Environmental triggers in IBD: a review of progress and evidence

AN Ananthakrishnan, CN Bernstein… - Nature reviews …, 2018 - nature.com
A number of environmental factors have been associated with the development of IBD.
Alteration of the gut microbiota, or dysbiosis, is closely linked to initiation or progression of …

DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays

A Singh, CP Shannon, B Gautier, F Rohart… - …, 2019 - academic.oup.com
Motivation In the continuously expanding omics era, novel computational and statistical
strategies are needed for data integration and identification of biomarkers and molecular …

[HTML][HTML] Multi-omics approaches in cancer research with applications in tumor subtyping, prognosis, and diagnosis

O Menyhárt, B Győrffy - Computational and structural biotechnology journal, 2021 - Elsevier
While cost-effective high-throughput technologies provide an increasing amount of data, the
analyses of single layers of data seldom provide causal relations. Multi-omics data …

The IBD interactome: an integrated view of aetiology, pathogenesis and therapy

HSP De Souza, C Fiocchi, D Iliopoulos - … Reviews Gastroenterology & …, 2017 - nature.com
Crohn's disease and ulcerative colitis are prototypical complex diseases characterized by
chronic and heterogeneous manifestations, induced by interacting environmental, genomic …

[HTML][HTML] A selective review of multi-level omics data integration using variable selection

C Wu, F Zhou, J Ren, X Li, Y Jiang, S Ma - High-throughput, 2019 - mdpi.com
High-throughput technologies have been used to generate a large amount of omics data. In
the past, single-level analysis has been extensively conducted where the omics …

[HTML][HTML] Approaches to integrating metabolomics and multi-omics data: a primer

T Jendoubi - Metabolites, 2021 - mdpi.com
Metabolomics deals with multiple and complex chemical reactions within living organisms
and how these are influenced by external or internal perturbations. It lies at the heart of …

[HTML][HTML] Missing data in multi-omics integration: Recent advances through artificial intelligence

JE Flores, DM Claborne, ZD Weller… - Frontiers in Artificial …, 2023 - frontiersin.org
Biological systems function through complex interactions between various 'omics
(biomolecules), and a more complete understanding of these systems is only possible …

Host and microbiome multi-omics integration: applications and methodologies

Q Wang, K Wang, W Wu, E Giannoulatou, JWK Ho… - Biophysical …, 2019 - Springer
The study of the microbial community—the microbiome—associated with a human host is a
maturing research field. It is increasingly clear that the composition of the human's …

[HTML][HTML] Statistical methods for mediation analysis in the era of high-throughput genomics: current successes and future challenges

P Zeng, Z Shao, X Zhou - Computational and structural biotechnology …, 2021 - Elsevier
Mediation analysis investigates the intermediate mechanism through which an exposure
exerts its influence on the outcome of interest. Mediation analysis is becoming increasingly …