Fitting heavy tailed distributions: the poweRlaw package

CS Gillespie - arXiv preprint arXiv:1407.3492, 2014 - arxiv.org
Over the last few years, the power law distribution has been used as the data generating
mechanism in many disparate fields. However, at times the techniques used to fit the power …

The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization

MT Alam, V Olin-Sandoval, A Stincone… - Nature …, 2017 - nature.com
Metabolites can inhibit the enzymes that generate them. To explore the general nature of
metabolic self-inhibition, we surveyed enzymological data accrued from a century of …

Using power laws to estimate conflict size

JA Friedman - Journal of Conflict Resolution, 2015 - journals.sagepub.com
Casualty counts are often controversial, and thorough research can only go so far in
resolving such debates—there will almost always be missing data, and thus, a need to draw …

Role of bioinformatics in biological sciences

D Gangotia, A Gupta, I Mani - Advances in bioinformatics, 2021 - Springer
Bioinformatics is an emerging area of science because technological advances in the field
of life sciences have led to the generation of increasingly accumulating large volumes of …

Estimating the number of casualties in the American Indian war: A Bayesian analysis using the power law distribution

CS Gillespie - 2017 - projecteuclid.org
Estimating the number of casualties in the American Indian war: A Bayesian analysis using
the power law distribution Page 1 The Annals of Applied Statistics 2017, Vol. 11, No. 4, 2357–2374 …

Human variome project quality assessment criteria for variation databases

M Vihinen, JM Hancock, DR Maglott… - Human …, 2016 - Wiley Online Library
Numerous databases containing information about DNA, RNA, and protein variations are
available. Gene‐specific variant databases (locus‐specific variation databases, LSDBs) are …

Optimization of gene set annotations via entropy minimization over variable clusters (EMVC)

HR Frost, JH Moore - Bioinformatics, 2014 - academic.oup.com
Motivation: Gene set enrichment has become a critical tool for interpreting the results of high-
throughput genomic experiments. Inconsistent annotation quality and lack of annotation …

Assessment of genome annotation using gene function similarity within the gene neighborhood

SR Jun, I Nookaew, L Hauser, A Gorin - BMC bioinformatics, 2017 - Springer
Background Functional annotation of bacterial genomes is an obligatory and crucially
important step of information processing from the genome sequences into cellular …

Can inferred provenance and its visualisation be used to detect erroneous annotation? A case study using UniProtKB

MJ Bell, M Collison, P Lord - PloS one, 2013 - journals.plos.org
A constant influx of new data poses a challenge in keeping the annotation in biological
databases current. Most biological databases contain significant quantities of textual …

[PDF][PDF] The poweRlaw package: Examples

CS Gillespie - 2014 - r.meteo.uni.wroc.pl
To get a handle on the uncertainty in the parameter estimates, we use a bootstrapping
procedure, via the bootstrap function. This procedure can be applied to any distribution …