[HTML][HTML] The ONIOM method and its applications

LW Chung, WMC Sameera, R Ramozzi… - Chemical …, 2015 - ACS Publications
The fields of theoretical and computational chemistry have come a long way since their
inception in the mid-20th century. Fifty years ago, only rudimentary approximations for very …

Recent advances in quantum fragmentation approaches to complex molecular and condensed‐phase systems

J Liu, X He - Wiley Interdisciplinary Reviews: Computational …, 2023 - Wiley Online Library
Quantum mechanical (QM) calculations are critical in quantitatively understanding the
relationship between the structure and physicochemical properties of various chemical …

Accurate descriptions of molecule-surface interactions in electrocatalytic CO2 reduction on the copper surfaces

Z Chen, Z Liu, X Xu - Nature Communications, 2023 - nature.com
Copper-based catalysts play a pivotal role in many industrial processes and hold a great
promise for electrocatalytic CO2 reduction reaction into valuable chemicals and fuels …

New techniques and strategies in drug discovery

J Du, J Guo, D Kang, Z Li, G Wang, J Wu, Z Zhang… - Chinese Chemical …, 2020 - Elsevier
Great success has been witnessed in last decades, some new techniques and strategies
have been widely used in drug discovery. In this roadmap, several representative …

Cov_DOX: a method for structure prediction of covalent protein–ligand bindings

L Wei, Y Chen, J Liu, L Rao, Y Ren… - Journal of Medicinal …, 2022 - ACS Publications
A handful of molecular docking tools have been extended to enable a covalent docking.
However, all of them face the challenge brought by the covalent bond between proteins and …

DOX_BDW: incorporating solvation and desolvation effects of cavity water into nonfitting protein–ligand binding affinity prediction

J Liu, J Wan, Y Ren, X Shao, X Xu… - Journal of Chemical …, 2023 - ACS Publications
Accurate prediction of the protein–ligand binding affinity (PLBA) with an affordable cost is
one of the ultimate goals in the field of structure-based drug design (SBDD), as well as a …

Janus mesoporous sensor devices for simultaneous multivariable gases detection

R Wang, K Lan, Z Chen, X Zhang, CT Hung, W Zhang… - Matter, 2019 - cell.com
Single-gas-phase chemical detections have recently attracted much attention in diverse
fields; however, the pathways of composite sensing systems for detection of multiple gases …

Toward Efficient and Unified Treatment of Static and Dynamic Correlations in Generalized Kohn–Sham Density Functional Theory

Y Wang, Z Lin, R Ouyang, B Jiang, IY Zhang, X Xu - JACS Au, 2024 - ACS Publications
Accurate description of the static correlation poses a persistent challenge in electronic
structure theory, particularly when it has to be concurrently considered with the dynamic …

Fragment-based quantum mechanical approach to biomolecules, molecular clusters, molecular crystals and liquids

J Liu, X He - Physical Chemistry Chemical Physics, 2020 - pubs.rsc.org
To study large molecular systems beyond the system size that the current state-of-the-art ab
initio electronic structure methods could handle, fragment-based quantum mechanical (QM) …

Accurate and cost-effective NMR chemical shift predictions for proteins using a molecules-in-molecules fragmentation-based method

SK Chandy, B Thapa, K Raghavachari - Physical Chemistry Chemical …, 2020 - pubs.rsc.org
We have developed an efficient protocol using our two-layer Molecules-in-Molecules (MIM2)
fragmentation-based quantum chemical method for the prediction of NMR chemical shifts of …