In vivo aspects of protein folding and quality control

D Balchin, M Hayer-Hartl, FU Hartl - Science, 2016 - science.org
BACKGROUND Proteins are synthesized on ribosomes as linear chains of amino acids and
must fold into unique three-dimensional structures to fulfill their biological functions. Protein …

Protein export through the bacterial Sec pathway

A Tsirigotaki, J De Geyter, A Economou… - Nature Reviews …, 2017 - nature.com
The general secretory (Sec) pathway comprises an essential, ubiquitous and universal
export machinery for most proteins that integrate into, or translocate through, the plasma …

Ribosome collisions trigger general stress responses to regulate cell fate

CCC Wu, A Peterson, B Zinshteyn, S Regot, R Green - Cell, 2020 - cell.com
Problems arising during translation of mRNAs lead to ribosome stalling and collisions that
trigger a series of quality control events. However, the global cellular response to ribosome …

[HTML][HTML] Neurons release serine to support mRNA translation in pancreatic cancer

RS Banh, DE Biancur, K Yamamoto, ASW Sohn… - Cell, 2020 - cell.com
Pancreatic ductal adenocarcinoma (PDAC) tumors have a nutrient-poor, desmoplastic, and
highly innervated tumor microenvironment. Although neurons can release stimulatory factors …

[HTML][HTML] Transcriptome-wide measurement of translation by ribosome profiling

NJ McGlincy, NT Ingolia - Methods, 2017 - Elsevier
Translation is one of the fundamental processes of life. It comprises the assembly of
polypeptides whose amino acid sequence corresponds to the codon sequence of an …

[HTML][HTML] Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources

GW Li, D Burkhardt, C Gross, JS Weissman - Cell, 2014 - cell.com
Quantitative views of cellular functions require precise measures of rates of biomolecule
production, especially proteins—the direct effectors of biological processes. Here, we …

Ribosome profiling reveals the what, when, where and how of protein synthesis

GA Brar, JS Weissman - Nature reviews Molecular cell biology, 2015 - nature.com
Ribosome profiling, which involves the deep sequencing of ribosome-protected mRNA
fragments, is a powerful tool for globally monitoring translation in vivo. The method has …

Ribosome footprint profiling of translation throughout the genome

NT Ingolia - Cell, 2016 - cell.com
Ribosome profiling has emerged as a technique for measuring translation comprehensively
and quantitatively by deep sequencing of ribosome-protected mRNA fragments. By …

Ribosome profiling: global views of translation

NT Ingolia, JA Hussmann… - Cold Spring Harbor …, 2019 - cshperspectives.cshlp.org
The translation of messenger RNA (mRNA) into protein and the folding of the resulting
protein into an active form are prerequisites for virtually every cellular process and represent …

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

NT Ingolia, GA Brar, S Rouskin, AM McGeachy… - Nature protocols, 2012 - nature.com
Recent studies highlight the importance of translational control in determining protein
abundance, underscoring the value of measuring gene expression at the level of translation …