In vivo aspects of protein folding and quality control
BACKGROUND Proteins are synthesized on ribosomes as linear chains of amino acids and
must fold into unique three-dimensional structures to fulfill their biological functions. Protein …
must fold into unique three-dimensional structures to fulfill their biological functions. Protein …
Protein export through the bacterial Sec pathway
A Tsirigotaki, J De Geyter, A Economou… - Nature Reviews …, 2017 - nature.com
The general secretory (Sec) pathway comprises an essential, ubiquitous and universal
export machinery for most proteins that integrate into, or translocate through, the plasma …
export machinery for most proteins that integrate into, or translocate through, the plasma …
Ribosome collisions trigger general stress responses to regulate cell fate
Problems arising during translation of mRNAs lead to ribosome stalling and collisions that
trigger a series of quality control events. However, the global cellular response to ribosome …
trigger a series of quality control events. However, the global cellular response to ribosome …
[HTML][HTML] Neurons release serine to support mRNA translation in pancreatic cancer
RS Banh, DE Biancur, K Yamamoto, ASW Sohn… - Cell, 2020 - cell.com
Pancreatic ductal adenocarcinoma (PDAC) tumors have a nutrient-poor, desmoplastic, and
highly innervated tumor microenvironment. Although neurons can release stimulatory factors …
highly innervated tumor microenvironment. Although neurons can release stimulatory factors …
[HTML][HTML] Transcriptome-wide measurement of translation by ribosome profiling
NJ McGlincy, NT Ingolia - Methods, 2017 - Elsevier
Translation is one of the fundamental processes of life. It comprises the assembly of
polypeptides whose amino acid sequence corresponds to the codon sequence of an …
polypeptides whose amino acid sequence corresponds to the codon sequence of an …
[HTML][HTML] Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources
Quantitative views of cellular functions require precise measures of rates of biomolecule
production, especially proteins—the direct effectors of biological processes. Here, we …
production, especially proteins—the direct effectors of biological processes. Here, we …
Ribosome profiling reveals the what, when, where and how of protein synthesis
GA Brar, JS Weissman - Nature reviews Molecular cell biology, 2015 - nature.com
Ribosome profiling, which involves the deep sequencing of ribosome-protected mRNA
fragments, is a powerful tool for globally monitoring translation in vivo. The method has …
fragments, is a powerful tool for globally monitoring translation in vivo. The method has …
Ribosome footprint profiling of translation throughout the genome
NT Ingolia - Cell, 2016 - cell.com
Ribosome profiling has emerged as a technique for measuring translation comprehensively
and quantitatively by deep sequencing of ribosome-protected mRNA fragments. By …
and quantitatively by deep sequencing of ribosome-protected mRNA fragments. By …
Ribosome profiling: global views of translation
NT Ingolia, JA Hussmann… - Cold Spring Harbor …, 2019 - cshperspectives.cshlp.org
The translation of messenger RNA (mRNA) into protein and the folding of the resulting
protein into an active form are prerequisites for virtually every cellular process and represent …
protein into an active form are prerequisites for virtually every cellular process and represent …
The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
Recent studies highlight the importance of translational control in determining protein
abundance, underscoring the value of measuring gene expression at the level of translation …
abundance, underscoring the value of measuring gene expression at the level of translation …