Text mining approaches for dealing with the rapidly expanding literature on COVID-19

LL Wang, K Lo - Briefings in Bioinformatics, 2021 - academic.oup.com
More than 50 000 papers have been published about COVID-19 since the beginning of
2020 and several hundred new papers continue to be published every day. This incredible …

Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Large language models are few-shot clinical information extractors

M Agrawal, S Hegselmann, H Lang, Y Kim… - arXiv preprint arXiv …, 2022 - arxiv.org
A long-running goal of the clinical NLP community is the extraction of important variables
trapped in clinical notes. However, roadblocks have included dataset shift from the general …

Closing the gap between open source and commercial large language models for medical evidence summarization

G Zhang, Q Jin, Y Zhou, S Wang, B Idnay, Y Luo… - npj Digital …, 2024 - nature.com
Large language models (LLMs) hold great promise in summarizing medical evidence. Most
recent studies focus on the application of proprietary LLMs. Using proprietary LLMs …

ChemDataExtractor: a toolkit for automated extraction of chemical information from the scientific literature

MC Swain, JM Cole - Journal of chemical information and …, 2016 - ACS Publications
The emergence of “big data” initiatives has led to the need for tools that can automatically
extract valuable chemical information from large volumes of unstructured data, such as the …

Deploying an interactive machine learning system in an evidence-based practice center: abstrackr

BC Wallace, K Small, CE Brodley, J Lau… - Proceedings of the 2nd …, 2012 - dl.acm.org
Medical researchers looking for evidence pertinent to a specific clinical question must
navigate an increasingly voluminous corpus of published literature. This data deluge has …

Extracting information from textual documents in the electronic health record: a review of recent research

SM Meystre, GK Savova… - Yearbook of medical …, 2008 - thieme-connect.com
Objectives We examine recent published research on the extraction of information from
textual documents in the Electronic Health Record (EHR). Methods Literature review of the …

GNormPlus: an integrative approach for tagging genes, gene families, and protein domains

CH Wei, HY Kao, Z Lu - BioMed research international, 2015 - Wiley Online Library
The automatic recognition of gene names and their associated database identifiers from
biomedical text has been widely studied in recent years, as these tasks play an important …

Overview of the ShARe/CLEF eHealth evaluation lab 2013

H Suominen, S Salanterä, S Velupillai… - … , and Visualization: 4th …, 2013 - Springer
Discharge summaries and other free-text reports in healthcare transfer information between
working shifts and geographic locations. Patients are likely to have difficulties in …

[HTML][HTML] Biomedical text mining and its applications in cancer research

F Zhu, P Patumcharoenpol, C Zhang, Y Yang… - Journal of biomedical …, 2013 - Elsevier
Cancer is a malignant disease that has caused millions of human deaths. Its study has a
long history of well over 100years. There have been an enormous number of publications on …