Ligand-binding affinity estimates supported by quantum-mechanical methods

U Ryde, P Soderhjelm - Chemical Reviews, 2016 - ACS Publications
One of the largest challenges of computational chemistry is calculation of accurate free
energies for the binding of a small molecule to a biological macromolecule, which has …

RNA–ligand molecular docking: Advances and challenges

Y Zhou, Y Jiang, SJ Chen - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
With rapid advances in computer algorithms and hardware, fast and accurate virtual
screening has led to a drastic acceleration in selecting potent small molecules as drug …

Statin use in primary inflammatory breast cancer: a cohort study

TM Brewer, H Masuda, DD Liu, Y Shen, P Liu… - British journal of …, 2013 - nature.com
Background: Some studies have suggested that statins, which have cholesterol-lowering
and anti-inflammatory properties, may have antitumor effects. Effects of statins on …

[HTML][HTML] Characterization of the binding interaction between atrazine and human serum albumin: Fluorescence spectroscopy, molecular dynamics and quantum …

VLB França, JL Amaral, YA Martins… - Chemico-Biological …, 2022 - Elsevier
Atrazine (ATR), one of the most used herbicides worldwide, causes persistent contamination
of water and soil due to its high resistance to degradation. ATR is associated with low fertility …

[图书][B] Quantum chemistry simulation of biological molecules

EL Albuquerque, UL Fulco, EWS Caetano, VN Freire - 2021 - books.google.com
Nano-biotechnology crosses the boundaries between physics, biochemistry and
bioengineering, and has profound implications for the biomedical engineering industry. This …

Quantum molecular modelling of ibuprofen bound to human serum albumin

DS Dantas, JIN Oliveira, JXL Neto, RF da Costa… - RSC Advances, 2015 - pubs.rsc.org
The binding of the nonsteroidal anti-inflammatory drug ibuprofen (IBU) to human serum
albumin (HSA) is investigated using density functional theory (DFT) calculations within a …

In silico description of the adsorption of cell signaling pathway proteins ovalbumin, glutathione, LC3, TLR4, ASC PYCARD, PI3K and NF-Kβ on 7.0 nm gold …

MM Coelho, EM Bezerra, RF da Costa… - RSC …, 2023 - pubs.rsc.org
The impact of vaccination on the world's population is difficult to calculate. For developing
different types of vaccines, adjuvants are substances added to vaccines to increase the …

Investigation of protein-protein interactions and hotspot region on the NSP7-NSP8 binding site in NSP12 of SARS-CoV-2

JX Lima Neto, KS Bezerra, ED Barbosa… - Frontiers in molecular …, 2024 - frontiersin.org
Background: The RNA-dependent RNA polymerase (RdRp) complex, essential in viral
transcription and replication, is a key target for antiviral therapeutics. The core unit of RdRp …

Solute-solvent interactions, electrostatic & covalent surface analysis, and pharmacokinetic studies via in-silico simulation on diethyl 3-hydroxyglutarate: Anti …

M Lawrence, P Rajesh, M Thirunavukkarasu… - Journal of Molecular …, 2023 - Elsevier
In this study, theoretical investigations of the anti-hypercholesterolemia molecule diethyl 3-
hydroxyglutarate (D3HG) have been carried out using DFT techniques. Vibrational spectral …

Inhibition of the checkpoint protein PD-1 by the therapeutic antibody pembrolizumab outlined by quantum chemistry

ABMLA Tavares, JX Lima Neto, UL Fulco… - Scientific reports, 2018 - nature.com
Much of the recent excitement in the cancer immunotherapy approach has been generated
by the recognition that immune checkpoint proteins, like the receptor PD-1, can be blocked …