UCSC Cell Browser: visualize your single-cell data
As the use of single-cell technologies has grown, so has the need for tools to explore these
large, complicated datasets. The UCSC Cell Browser is a tool that allows scientists to …
large, complicated datasets. The UCSC Cell Browser is a tool that allows scientists to …
[PDF][PDF] A single-cell RNA-sequencing training and analysis suite using the Galaxy framework
Background The vast ecosystem of single-cell RNA-sequencing tools has until recently been
plagued by an excess of diverging analysis strategies, inconsistent file formats, and …
plagued by an excess of diverging analysis strategies, inconsistent file formats, and …
Meta-analysis of COVID-19 single-cell studies confirms eight key immune responses
Several single-cell RNA sequencing (scRNA-seq) studies analyzing immune response to
COVID-19 infection have been recently published. Most of these studies have small sample …
COVID-19 infection have been recently published. Most of these studies have small sample …
A single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework
Background The vast ecosystem of single-cell RNA-seq tools has until recently been
plagued by an excess of diverging analysis strategies, inconsistent file formats, and …
plagued by an excess of diverging analysis strategies, inconsistent file formats, and …
Meta-analysis reveals consistent immune response patterns in COVID-19 infected patients at single-cell resolution
A number of single-cell RNA studies looking at the human immune response to the
coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome …
coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome …
[HTML][HTML] Filter, Plot and Explore Single-cell RNA-seq Data
W Bacon - 2023 - galaxyproject.github.io
Objectives: Interpret quality control plots to direct parameter decisions Repeat analysis from
matrix to clustering Identify decision-making points Appraise data outputs and decisions …
matrix to clustering Identify decision-making points Appraise data outputs and decisions …
[HTML][HTML] Approaches for containerized scientific workflows in cloud environments with applications in life science
O Spjuth, M Capuccini, M Carone, A Larsson… - …, 2021 - f1000research.com
Containers are gaining popularity in life science research as they provide a solution for
encompassing dependencies of provisioned tools, simplify software installations for end …
encompassing dependencies of provisioned tools, simplify software installations for end …
[HTML][HTML] Filtrado, representación y exploración de secuenciación de ARN de células únicas
W Bacon, PC López, B Serrano-Solano, N Palopoli… - 2023 - training.galaxyproject.org
Objetivos: Interpretar gráficos con control de calidad para decidir los valores de los
parámetros Repetir el análisis desde una matriz hasta agrupamientos Identificar puntos de …
parámetros Repetir el análisis desde una matriz hasta agrupamientos Identificar puntos de …
[HTML][HTML] Generación de una matriz de datos de secuenciación de ARN de células únicas utilizando Alevin
W Bacon, J Manning, PC López, A Escobar-Zepeda - 2023 - training.galaxyproject.org
Hands-on: Generación de una matriz de datos de secuenciación de ARN de células únicas
utilizando Alevin / Combining single cell datasets after pre-processing / Single Cell Galaxy …
utilizando Alevin / Combining single cell datasets after pre-processing / Single Cell Galaxy …
[HTML][HTML] Filter, plot and explore single-cell RNA-seq data with Scanpy
W Bacon - 2024 - training.galaxyproject.org
Objectives: Interpret quality control plots to direct parameter decisions Repeat analysis from
matrix to clustering Identify decision-making points Appraise data outputs and decisions …
matrix to clustering Identify decision-making points Appraise data outputs and decisions …