UCSC Cell Browser: visualize your single-cell data

ML Speir, A Bhaduri, NS Markov, P Moreno… - …, 2021 - academic.oup.com
As the use of single-cell technologies has grown, so has the need for tools to explore these
large, complicated datasets. The UCSC Cell Browser is a tool that allows scientists to …

[PDF][PDF] A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

M Tekman, B Batut, A Ostrovsky, C Antoniewski… - …, 2020 - academic.oup.com
Background The vast ecosystem of single-cell RNA-sequencing tools has until recently been
plagued by an excess of diverging analysis strategies, inconsistent file formats, and …

Meta-analysis of COVID-19 single-cell studies confirms eight key immune responses

M Garg, X Li, P Moreno, I Papatheodorou, Y Shu… - Scientific reports, 2021 - nature.com
Several single-cell RNA sequencing (scRNA-seq) studies analyzing immune response to
COVID-19 infection have been recently published. Most of these studies have small sample …

A single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework

M Tekman, B Batut, A Ostrovsky, C Antoniewski… - BioRxiv, 2020 - biorxiv.org
Background The vast ecosystem of single-cell RNA-seq tools has until recently been
plagued by an excess of diverging analysis strategies, inconsistent file formats, and …

Meta-analysis reveals consistent immune response patterns in COVID-19 infected patients at single-cell resolution

M Garg, X Li, P Moreno, I Papatheodorou, Y Shu… - bioRxiv, 2021 - biorxiv.org
A number of single-cell RNA studies looking at the human immune response to the
coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome …

[HTML][HTML] Filter, Plot and Explore Single-cell RNA-seq Data

W Bacon - 2023 - galaxyproject.github.io
Objectives: Interpret quality control plots to direct parameter decisions Repeat analysis from
matrix to clustering Identify decision-making points Appraise data outputs and decisions …

[HTML][HTML] Approaches for containerized scientific workflows in cloud environments with applications in life science

O Spjuth, M Capuccini, M Carone, A Larsson… - …, 2021 - f1000research.com
Containers are gaining popularity in life science research as they provide a solution for
encompassing dependencies of provisioned tools, simplify software installations for end …

[HTML][HTML] Filtrado, representación y exploración de secuenciación de ARN de células únicas

W Bacon, PC López, B Serrano-Solano, N Palopoli… - 2023 - training.galaxyproject.org
Objetivos: Interpretar gráficos con control de calidad para decidir los valores de los
parámetros Repetir el análisis desde una matriz hasta agrupamientos Identificar puntos de …

[HTML][HTML] Generación de una matriz de datos de secuenciación de ARN de células únicas utilizando Alevin

W Bacon, J Manning, PC López, A Escobar-Zepeda - 2023 - training.galaxyproject.org
Hands-on: Generación de una matriz de datos de secuenciación de ARN de células únicas
utilizando Alevin / Combining single cell datasets after pre-processing / Single Cell Galaxy …

[HTML][HTML] Filter, plot and explore single-cell RNA-seq data with Scanpy

W Bacon - 2024 - training.galaxyproject.org
Objectives: Interpret quality control plots to direct parameter decisions Repeat analysis from
matrix to clustering Identify decision-making points Appraise data outputs and decisions …