Bayesian statistics in medicine: a 25 year review
D Ashby - Statistics in medicine, 2006 - Wiley Online Library
This review examines the state of Bayesian thinking as Statistics in Medicine was launched
in 1982, reflecting particularly on its applicability and uses in medical research. It then looks …
in 1982, reflecting particularly on its applicability and uses in medical research. It then looks …
Geometric integrators and the Hamiltonian Monte Carlo method
N Bou-Rabee, JM Sanz-Serna - Acta Numerica, 2018 - cambridge.org
This paper surveys in detail the relations between numerical integration and the Hamiltonian
(or hybrid) Monte Carlo method (HMC). Since the computational cost of HMC mainly lies in …
(or hybrid) Monte Carlo method (HMC). Since the computational cost of HMC mainly lies in …
The Spo0A regulon of Bacillus subtilis
The master regulator for entry into sporulation in Bacillus subtilis is the DNA‐binding protein
Spo0A, which has been found to influence, directly or indirectly, the expression of over 500 …
Spo0A, which has been found to influence, directly or indirectly, the expression of over 500 …
[HTML][HTML] The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis
Asymmetric division during sporulation by Bacillus subtilis generates a mother cell that
undergoes a 5-h program of differentiation. The program is governed by a hierarchical …
undergoes a 5-h program of differentiation. The program is governed by a hierarchical …
A modified Henry gas solubility optimization for solving motif discovery problem
FA Hashim, EH Houssein, K Hussain… - Neural Computing and …, 2020 - Springer
The DNA motif discovery (MD) problem is the main challenge of genome biology, and its
importance is directly proportional to increasing sequencing technologies. MD plays a vital …
importance is directly proportional to increasing sequencing technologies. MD plays a vital …
[HTML][HTML] Review of different sequence motif finding algorithms
FA Hashim, MS Mabrouk… - Avicenna journal of …, 2019 - ncbi.nlm.nih.gov
The DNA motif discovery is a primary step in many systems for studying gene function. Motif
discovery plays a vital role in identification of Transcription Factor Binding Sites (TFBSs) that …
discovery plays a vital role in identification of Transcription Factor Binding Sites (TFBSs) that …
Equi-energy sampler with applications in statistical inference and statistical mechanics
We introduce a new sampling algorithm, the equi-energy sampler, for efficient statistical
sampling and estimation. Complementary to the widely used temperature-domain methods …
sampling and estimation. Complementary to the widely used temperature-domain methods …
[HTML][HTML] A survey of motif discovery methods in an integrated framework
GK Sandve, F Drabløs - Biology direct, 2006 - Springer
Background There has been a growing interest in computational discovery of regulatory
elements, and a multitude of motif discovery methods have been proposed. Computational …
elements, and a multitude of motif discovery methods have been proposed. Computational …
GADEM: a genetic algorithm guided formation of spaced dyads coupled with an EM algorithm for motif discovery
L Li - Journal of Computational Biology, 2009 - liebertpub.com
Genome-wide analyses of protein binding sites generate large amounts of data; a ChIP
dataset might contain 10,000 sites. Unbiased motif discovery in such datasets is not …
dataset might contain 10,000 sites. Unbiased motif discovery in such datasets is not …
GAME: detecting cis-regulatory elements using a genetic algorithm
Motivation: Identification of a transcription factor binding sites is an important aspect of the
analysis of genetic regulation. Many programs have been developed for the de novo …
analysis of genetic regulation. Many programs have been developed for the de novo …