Mechanisms of change in gene copy number

PJ Hastings, JR Lupski, SM Rosenberg… - Nature Reviews Genetics, 2009 - nature.com
Deletions and duplications of chromosomal segments (copy number variants, CNVs) are a
major source of variation between individual humans and are an underlying factor in human …

Origins, evolution, and phenotypic impact of new genes

H Kaessmann - Genome research, 2010 - genome.cshlp.org
Ever since the pre-molecular era, the birth of new genes with novel functions has been
considered to be a major contributor to adaptive evolutionary innovation. Here, I review the …

Complete genomic and epigenetic maps of human centromeres

N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani… - Science, 2022 - science.org
Existing human genome assemblies have almost entirely excluded repetitive sequences
within and near centromeres, limiting our understanding of their organization, evolution, and …

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

S Nurk, BP Walenz, A Rhie, MR Vollger… - Genome …, 2020 - genome.cshlp.org
Complete and accurate genome assemblies form the basis of most downstream genomic
analyses and are of critical importance. Recent genome assembly projects have relied on a …

LD Score regression distinguishes confounding from polygenicity in genome-wide association studies

BK Bulik-Sullivan, PR Loh, HK Finucane, S Ripke… - Nature …, 2015 - nature.com
Both polygenicity (many small genetic effects) and confounding biases, such as cryptic
relatedness and population stratification, can yield an inflated distribution of test statistics in …

[HTML][HTML] Cellular source and mechanisms of high transcriptome complexity in the mammalian testis

M Soumillon, A Necsulea, M Weier, D Brawand… - Cell reports, 2013 - cell.com
Understanding the extent of genomic transcription and its functional relevance is a central
goal in genomics research. However, detailed genome-wide investigations of transcriptome …

[HTML][HTML] The bonobo genome compared with the chimpanzee and human genomes

K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller… - Nature, 2012 - nature.com
Two African apes are the closest living relatives of humans: the chimpanzee (Pan
troglodytes) and the bonobo (Pan paniscus). Although they are similar in many respects …

Finishing the euchromatic sequence of the human genome

International Human Genome Sequencing Consortium - Nature, 2004 - nature.com
The sequence of the human genome encodes the genetic instructions for human
physiology, as well as rich information about human evolution. In 2001, the International …

The DNA sequence of the human X chromosome

MT Ross, DV Grafham, AJ Coffey, S Scherer, K McLay… - Nature, 2005 - nature.com
The human X chromosome has a unique biology that was shaped by its evolution as the sex
chromosome shared by males and females. We have determined 99.3% of the euchromatic …

[HTML][HTML] Segmental duplications and copy-number variation in the human genome

AJ Sharp, DP Locke, SD McGrath, Z Cheng… - The American Journal of …, 2005 - cell.com
The human genome contains numerous blocks of highly homologous duplicated sequence.
This higher-order architecture provides a substrate for recombination and recurrent …