Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory

DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …

The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota

JC Lagier, P Hugon, S Khelaifia… - Clinical microbiology …, 2015 - Am Soc Microbiol
Bacterial culture was the first method used to describe the human microbiota, but this
method is considered outdated by many researchers. Metagenomics studies have since …

Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens

R Srinivasan, U Karaoz, M Volegova, J MacKichan… - PloS one, 2015 - journals.plos.org
According to World Health Organization statistics of 2011, infectious diseases remain in the
top five causes of mortality worldwide. However, despite sophisticated research tools for …

Muc5b is required for airway defence

MG Roy, A Livraghi-Butrico, AA Fletcher, MM McElwee… - Nature, 2014 - nature.com
Respiratory surfaces are exposed to billions of particulates and pathogens daily. A
protective mucus barrier traps and eliminates them through mucociliary clearance (MCC) …

Targeting the 16s rRNA gene for bacterial identification in complex mixed samples: Comparative evaluation of second (illumina) and third (oxford nanopore …

R Winand, B Bogaerts, S Hoffman, L Lefevre… - International journal of …, 2019 - mdpi.com
Rapid, accurate bacterial identification in biological samples is an important task for
microbiology laboratories, for which 16S rRNA gene Sanger sequencing of cultured isolates …

A comprehensive repertoire of prokaryotic species identified in human beings

P Hugon, JC Dufour, P Colson, PE Fournier… - The Lancet Infectious …, 2015 - thelancet.com
The compilation of the complete prokaryotic repertoire associated with human beings as
commensals or pathogens is a major goal for the scientific and medical community. The use …

[HTML][HTML] Screening of isolated potential probiotic lactic acid bacteria for cholesterol lowering property and bile salt hydrolase activity

MG Shehata, SA El Sohaimy, MA El-Sahn… - Annals of Agricultural …, 2016 - Elsevier
A total of 142 isolates of lactic acid bacteria (LAB) were isolated from dairy and non-dairy
sources. The LAB isolates were screened for antimicrobial activity. Out of 142 isolates only …

Advancing our understanding of the human microbiome using QIIME

JA Navas-Molina, JM Peralta-Sánchez… - Methods in …, 2013 - Elsevier
High-throughput DNA sequencing technologies, coupled with advanced bioinformatics
tools, have enabled rapid advances in microbial ecology and our understanding of the …

Phytoplasma taxonomy: nomenclature, classification, and identification

W Wei, Y Zhao - Biology, 2022 - mdpi.com
Simple Summary Phytoplasmas are vector-borne and graft-transmissible bacteria that cause
various plant diseases, leading to severe economic losses. Since phytoplasmas cannot be …

Microbial translocation in the pathogenesis of HIV infection and AIDS

G Marchetti, C Tincati, G Silvestri - Clinical microbiology reviews, 2013 - Am Soc Microbiol
In pathogenic simian immunodeficiency virus (SIV) and human immunodeficiency virus
(HIV) infections, the translocation of microbial products from the gastrointestinal (GI) tract to …