Transcription termination and anti‐termination in E. coli

E Nudler, ME Gottesman - Genes to cells, 2002 - Wiley Online Library
Transcription termination in Escherichia coli is controlled by many factors. The sequence of
the DNA template, the structure of the transcript, and the actions of auxiliary proteins all play …

[HTML][HTML] Sigma and RNA polymerase: an on-again, off-again relationship?

RA Mooney, SA Darst, R Landick - Molecular cell, 2005 - cell.com
In bacteria, a fundamental level of gene regulation occurs by competitive association of
promoter-specificity factors called σs with RNA polymerase (RNAP). This σ cycle paradigm …

Prediction of rho-independent Escherichia coli transcription terminators: A statistical analysis of their RNA stem-loop structures

YA Carafa, E Brody, C Thermes - Journal of molecular biology, 1990 - Elsevier
Escherichia coli rho-independent transcription terminators are characterized by an RNA
structure having a G+ C-rich stem-loop followed by a series of uridine residues, but they can …

[PDF][PDF] Shortening of RNA: DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination

N Komissarova, J Becker, S Solter, M Kireeva… - Molecular cell, 2002 - cell.com
Passage of E. coli RNA polymerase through an intrinsic transcription terminator, which
encodes an RNA hairpin followed by a stretch of uridine residues, results in quick …

Thinking quantitatively about transcriptional regulation

SJ Greive, PH Von Hippel - Nature Reviews Molecular Cell Biology, 2005 - nature.com
By thinking about the chemical and physical mechanisms that are involved in the stepwise
elongation of RNA transcripts, we can begin to understand the way that these mechanisms …

Parameters affecting transcription termination by Escherichia coli RNA polymerase: I. Analysis of 13 rho-independent terminators

R Reynolds, RM Bermúdez-Cruz… - Journal of molecular …, 1992 - Elsevier
Escherichia coli RNA polymerase can terminate transcription efficiently at rho-independent
terminators in a purified transcription system in the absence of accessory factors. This …

[PDF][PDF] Tethered particle motion method for studying transcript elongation by a single RNA polymerase molecule

H Yin, R Landick, J Gelles - Biophysical journal, 1994 - cell.com
Schafer et al.(Nature 352: 444–448 (1991)) devised the tethered particle motion (TPM)
method to detect directly the movement of single, isolated molecules of a processive nucleic …

Three-dimensional structure of E. coil core RNA polymerase: Promoter binding and elongation conformations of the enzyme

A Polyakov, E Severinova, SA Darst - Cell, 1995 - cell.com
The structure of E. coli core RNA polymerase(RNAP) has been determined to-23 A
resolution by threedimensional reconstruction from electron micrographs of flattened helical …

Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro.

LM Hsu, NV Vo, MJ Chamberlin - Proceedings of the …, 1995 - National Acad Sciences
The process of RNA chain initiation by RNA polymerases plays a central role in the
regulation of transcription. In this complex phase of transcription, short oligomers are …

Escherichia coli σ70 and NusA proteins: I. binding interactions with core RNA polymerase in solution and within the transcription complex

SC Gill, SE Weitzel, PH von Hippel - Journal of molecular biology, 1991 - Elsevier
This paper describes the binding interactions of Escherichia coli transcription factors σ 70
and NusA with core RNA polymerase, both free in solution and as a part of the functional …