A Review of Machine Learning and Algorithmic Methods for Protein Phosphorylation Site Prediction
F Esmaili, M Pourmirzaei, S Ramazi… - Genomics …, 2023 - academic.oup.com
Post-translational modifications (PTMs) have key roles in extending the functional diversity
of proteins and, as a result, regulating diverse cellular processes in prokaryotic and …
of proteins and, as a result, regulating diverse cellular processes in prokaryotic and …
Emerging trends in post-translational modification: Shedding light on Glioblastoma multiforme
Recent multi-omics studies, including proteomics, transcriptomics, genomics, and
metabolomics have revealed the critical role of post-translational modifications (PTMs) in the …
metabolomics have revealed the critical role of post-translational modifications (PTMs) in the …
Predicting protein phosphorylation sites in soybean using interpretable deep tabular learning network
E Khalili, S Ramazi, F Ghanati… - Briefings in …, 2022 - academic.oup.com
Phosphorylation of proteins is one of the most significant post-translational modifications
(PTMs) and plays a crucial role in plant functionality due to its impact on signaling, gene …
(PTMs) and plays a crucial role in plant functionality due to its impact on signaling, gene …
Evaluating machine learning-powered classification algorithms which utilize variants in the GCKR gene to predict metabolic syndrome: Tehran Cardio-metabolic …
Abstract Background Metabolic syndrome (MetS) is a prevalent multifactorial disorder that
can increase the risk of developing diabetes, cardiovascular diseases, and cancer. We …
can increase the risk of developing diabetes, cardiovascular diseases, and cancer. We …
Deep learning in phosphoproteomics: methods and application in cancer drug discovery
N Varshney, AK Mishra - Proteomes, 2023 - mdpi.com
Protein phosphorylation is a key post-translational modification (PTM) that is a central
regulatory mechanism of many cellular signaling pathways. Several protein kinases and …
regulatory mechanism of many cellular signaling pathways. Several protein kinases and …
Comprehensive analysis of the lysine succinylome in fish oil-treated prostate cancer cells
Y Jiang, C He, H Ye, Q Xu, X Chen… - Life Science …, 2023 - life-science-alliance.org
Prostate cancer (PCa) poses a significant health threat to males, and research has shown
that fish oil (FO) can impede PCa progression by activating multiple mitochondria-related …
that fish oil (FO) can impede PCa progression by activating multiple mitochondria-related …
A hybrid feature extraction scheme for efficient malonylation site prediction
Lysine malonylation is one of the most important post-translational modifications (PTMs). It
affects the functionality of cells. Malonylation site prediction in proteins can unfold the …
affects the functionality of cells. Malonylation site prediction in proteins can unfold the …
Holistic similarity-based prediction of phosphorylation sites for understudied kinases
Phosphorylation is an essential mechanism for regulating protein activities. Determining
kinase-specific phosphorylation sites by experiments involves time-consuming and …
kinase-specific phosphorylation sites by experiments involves time-consuming and …
Comparative phosphoproteomics of neuro-2a cells under insulin resistance reveals new molecular signatures of Alzheimer's disease
D Kim, YS Jo, HS Jo, S Bae, YW Kwon, YS Oh… - International Journal of …, 2022 - mdpi.com
Insulin in the brain is a well-known critical factor in neuro-development and regulation of
adult neurogenesis in the hippocampus. The abnormality of brain insulin signaling is …
adult neurogenesis in the hippocampus. The abnormality of brain insulin signaling is …
Machine learning-based approaches for ubiquitination site prediction in human proteins
M Pourmirzaei, S Ramazi, F Esmaili… - BMC …, 2023 - Springer
Protein ubiquitination is a critical post-translational modification (PTMs) involved in
numerous cellular processes. Identifying ubiquitination sites (Ubi-sites) on proteins offers …
numerous cellular processes. Identifying ubiquitination sites (Ubi-sites) on proteins offers …