Toward a global virus genomic surveillance network

V Hill, G Githinji, CBF Vogels, AI Bento, C Chaguza… - Cell host & …, 2023 - cell.com
The COVID-19 pandemic galvanized the field of virus genomic surveillance, demonstrating
its utility for public health. Now, we must harness the momentum that led to increased …

[HTML][HTML] Human papillomavirus genomics: Understanding carcinogenicity

CW Nelson, L Mirabello - Tumour Virus Research, 2023 - Elsevier
Human papillomavirus (HPV) causes virtually all cervical cancers and many cancers at other
anatomical sites in both men and women. However, only 12 of 448 known HPV types are …

Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR

RD Olson, R Assaf, T Brettin, N Conrad… - Nucleic acids …, 2023 - academic.oup.com
Abstract The National Institute of Allergy and Infectious Diseases (NIAID) established the
Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the …

The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

JE Pekar, A Magee, E Parker, N Moshiri, K Izhikevich… - Science, 2022 - science.org
Understanding the circumstances that lead to pandemics is important for their prevention.
We analyzed the genomic diversity of severe acute respiratory syndrome coronavirus 2 …

[HTML][HTML] Divergent SARS-CoV-2 variant emerges in white-tailed deer with deer-to-human transmission

B Pickering, O Lung, F Maguire, P Kruczkiewicz… - Nature …, 2022 - nature.com
Wildlife reservoirs of broad-host-range viruses have the potential to enable evolution of viral
variants that can emerge to infect humans. In North America, there is phylogenomic …

[HTML][HTML] Viral infection and transmission in a large, well-traced outbreak caused by the SARS-CoV-2 Delta variant

B Li, A Deng, K Li, Y Hu, Z Li, Y Shi, Q Xiong… - Nature …, 2022 - nature.com
Abstract The SARS-CoV-2 Delta variant has spread rapidly worldwide. To provide data on
its virological profile, we here report the first local transmission of Delta in mainland China …

Estimating infectiousness throughout SARS-CoV-2 infection course

TC Jones, G Biele, B Mühlemann, T Veith, J Schneider… - Science, 2021 - science.org
INTRODUCTION Although post facto studies have revealed the importance of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission from presymptomatic …

[HTML][HTML] Adeno-associated virus type 2 in US children with acute severe hepatitis

V Servellita, A Sotomayor Gonzalez, DM Lamson… - Nature, 2023 - nature.com
As of August 2022, clusters of acute severe hepatitis of unknown aetiology in children have
been reported from 35 countries, including the USA,. Previous studies have found human …

Multiple spillovers from humans and onward transmission of SARS-CoV-2 in white-tailed deer

SV Kuchipudi, M Surendran-Nair… - Proceedings of the …, 2022 - National Acad Sciences
Many animal species are susceptible to severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2) infection and could act as reservoirs; however, transmission in free-living …

[HTML][HTML] Probable transmission of SARS-CoV-2 omicron variant in quarantine hotel, Hong Kong, China, November 2021

H Gu, P Krishnan, DYM Ng, LDJ Chang… - Emerging infectious …, 2022 - ncbi.nlm.nih.gov
We report detection of severe acute respiratory syndrome coronavirus 2 Omicron variant (B.
1.1. 529) in an asymptomatic, fully vaccinated traveler in a quarantine hotel in Hong Kong …