Causes of mutation rate variability in plant genomes
D Quiroz, M Lensink, DJ Kliebenstein… - Annual Review of …, 2023 - annualreviews.org
Mutation is the source of all heritable diversity, the essential material of evolution and
breeding. While mutation rates are often regarded as constant, variability in mutation rates …
breeding. While mutation rates are often regarded as constant, variability in mutation rates …
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory
Five versions of the Chlamydomonas reinhardtii reference genome have been produced
over the last two decades. Here we present version 6, bringing significant advances in …
over the last two decades. Here we present version 6, bringing significant advances in …
Replitrons: A major group of eukaryotic transposons encoding HUH endonuclease
RJ Craig - Proceedings of the National Academy of …, 2023 - National Acad Sciences
HUH endonucleases of the Rep (replication protein) class mediate the replication of highly
diverse plasmids and viral genomes across all domains of life. HUH transposases have …
diverse plasmids and viral genomes across all domains of life. HUH transposases have …
Telomerase-independent survival leads to a mosaic of complex subtelomere rearrangements in Chlamydomonas reinhardtii
Telomeres and subtelomeres, the genomic regions located at chromosome extremities, are
essential for genome stability in eukaryotes. In the absence of the canonical maintenance …
essential for genome stability in eukaryotes. In the absence of the canonical maintenance …
Blessing or curse: how the epigenetic resolution of host-transposable element conflicts shapes their evolutionary dynamics
Transposable elements (TEs) are selfish genetic elements whose antagonistic interactions
with hosts represent a common genetic conflict in eukaryotes. To resolve this conflict, hosts …
with hosts represent a common genetic conflict in eukaryotes. To resolve this conflict, hosts …
Extraction and selection of high-molecular-weight DNA for long-read sequencing from Chlamydomonas reinhardtii
Recent advances in long-read sequencing technologies have enabled the complete
assembly of eukaryotic genomes from telomere to telomere by allowing repeated regions to …
assembly of eukaryotic genomes from telomere to telomere by allowing repeated regions to …
The Effects of De Novo Mutation on Gene Expression and the Consequences for Fitness in Chlamydomonas reinhardtii
EJ Balogun, RW Ness - Molecular Biology and Evolution, 2024 - academic.oup.com
Mutation is the ultimate source of genetic variation, the bedrock of evolution. Yet, predicting
the consequences of new mutations remains a challenge in biology. Gene expression …
the consequences of new mutations remains a challenge in biology. Gene expression …
What makes a good reference? First steps toward a Chlamydomonas pangenome
C Chan, PA Salomé - 2023 - academic.oup.com
Sequencing an “entire” genome used to be an accomplishment. However, improvements in
sequencing technologies have resulted in an avalanche of genomes “in progress”; good …
sequencing technologies have resulted in an avalanche of genomes “in progress”; good …
[HTML][HTML] Latent infection of an active giant endogenous virus in a unicellular green alga
Latency is a common strategy in a wide range of viral lineages, but its prevalence in giant
viruses remains unknown. Here we describe the activity and viral production from a 617 kbp …
viruses remains unknown. Here we describe the activity and viral production from a 617 kbp …