Extreme genome reduction in symbiotic bacteria

JP McCutcheon, NA Moran - Nature Reviews Microbiology, 2012 - nature.com
Since 2006, numerous cases of bacterial symbionts with extraordinarily small genomes
have been reported. These organisms represent independent lineages from diverse …

Plant mitochondrial genome diversity: the genomics revolution

JP Mower, DB Sloan, AJ Alverson - Plant genome diversity volume 1: plant …, 2012 - Springer
Mitochondrial genomes are remarkably diverse among green plants, and the explosion of
genome sequencing over the last 30 years has greatly expanded our understanding of this …

OrganellarGenomeDRAW (OGDRAW) version 1.3. 1: expanded toolkit for the graphical visualization of organellar genomes

S Greiner, P Lehwark, R Bock - Nucleic acids research, 2019 - academic.oup.com
Organellar (plastid and mitochondrial) genomes play an important role in resolving
phylogenetic relationships, and next-generation sequencing technologies have led to a …

[HTML][HTML] Origin and evolution of the octoploid strawberry genome

PP Edger, TJ Poorten, R VanBuren, MA Hardigan… - Nature …, 2019 - nature.com
Cultivated strawberry emerged from the hybridization of two wild octoploid species, both
descendants from the merger of four diploid progenitor species into a single nucleus more …

GeSeq–versatile and accurate annotation of organelle genomes

M Tillich, P Lehwark, T Pellizzer… - Nucleic acids …, 2017 - academic.oup.com
We have developed the web application GeSeq (https://chlorobox. mpimp-golm. mpg.
de/geseq. html) for the rapid and accurate annotation of organellar genome sequences, in …

NOVOPlasty: de novo assembly of organelle genomes from whole genome data

N Dierckxsens, P Mardulyn, G Smits - Nucleic acids research, 2017 - academic.oup.com
The evolution in next-generation sequencing (NGS) technology has led to the development
of many different assembly algorithms, but few of them focus on assembling the organelle …

Mitochondrial and plastid genome architecture: reoccurring themes, but significant differences at the extremes

DR Smith, PJ Keeling - Proceedings of the National …, 2015 - National Acad Sciences
Mitochondrial and plastid genomes show a wide array of architectures, varying immensely in
size, structure, and content. Some organelle DNAs have even developed elaborate …

[HTML][HTML] Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates

DB Sloan, AJ Alverson, JP Chuckalovcak, M Wu… - PLoS …, 2012 - journals.plos.org
Genome size and complexity vary tremendously among eukaryotic species and their
organelles. Comparisons across deeply divergent eukaryotic lineages have suggested that …

[HTML][HTML] The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

JL Olsen, P Rouzé, B Verhelst, YC Lin, T Bayer… - Nature, 2016 - nature.com
Seagrasses colonized the sea on at least three independent occasions to form the basis of
one of the most productive and widespread coastal ecosystems on the planet. Here we …

[HTML][HTML] Architecture and evolution of a minute plant genome

E Ibarra-Laclette, E Lyons, G Hernández-Guzmán… - Nature, 2013 - nature.com
It has been argued that the evolution of plant genome size is principally unidirectional and
increasing owing to the varied action of whole-genome duplications (WGDs) and mobile …