Single-cell transcriptomics meets lineage tracing

L Kester, A Van Oudenaarden - Cell stem cell, 2018 - cell.com
Reconstructing lineage relationships between cells within a tissue or organism is a long-
standing aim in biology. Traditionally, lineage tracing has been achieved through the …

[HTML][HTML] Cancer genome evolutionary trajectories in metastasis

NJ Birkbak, N McGranahan - Cancer cell, 2020 - cell.com
Metastatic cancer is a major cause of death and remains largely incurable. A better
understanding of metastasis is therefore desperately needed to improve prognosis for late …

Single-cell RNA sequencing reveals cell heterogeneity and transcriptome profile of breast cancer lymph node metastasis

K Xu, R Wang, H Xie, L Hu, C Wang, J Xu, C Zhu, Y Liu… - Oncogenesis, 2021 - nature.com
Molecular mechanisms underlying breast cancer lymph node metastasis remain unclear.
Using single-cell sequencing, we investigated the transcriptome profile of 96,796 single …

[HTML][HTML] Genomic evolution of breast cancer metastasis and relapse

LR Yates, S Knappskog, D Wedge, JHR Farmery… - Cancer cell, 2017 - cell.com
Patterns of genomic evolution between primary and metastatic breast cancer have not been
studied in large numbers, despite patients with metastatic breast cancer having dismal …

Computational immunogenomic approaches to predict response to cancer immunotherapies

V Addala, F Newell, JV Pearson, A Redwood… - Nature Reviews …, 2024 - nature.com
Cancer immunogenomics is an emerging field that bridges genomics and immunology. The
establishment of large-scale genomic collaborative efforts along with the development of …

Understanding tumor ecosystems by single-cell sequencing: promises and limitations

X Ren, B Kang, Z Zhang - Genome biology, 2018 - Springer
Cellular heterogeneity within and across tumors has been a major obstacle in
understanding and treating cancer, and the complex heterogeneity is masked if bulk tumor …

Remodeled tumor immune microenvironment (TIME) parade via natural killer cells reprogramming in breast cancer

MM Elanany, D Mostafa, NM Hamdy - Life sciences, 2023 - Elsevier
Breast cancer (BC) is the main cause of cancer-related mortality among women globally.
Despite substantial advances in the identification and management of primary tumors …

Circulating tumor cells in diagnosis and treatment of lung cancer

V Maly, O Maly, K Kolostova, V Bobek - in vivo, 2019 - iv.iiarjournals.org
Circulating tumor cells (CTCs), detached from the primary tumor or metastases and shed in
the patient's bloodstream, represent a relatively easily obtainable sample of the cancer …

Multicellular immune dynamics implicate PIM1 as a potential therapeutic target for uveitis

H Li, L Xie, L Zhu, Z Li, R Wang, X Liu, Z Huang… - Nature …, 2022 - nature.com
Uveitis is a severe autoimmune disease, and a common cause of blindness; however, its
individual cellular dynamics and pathogenic mechanism remain poorly understood. Herein …

Timing somatic events in the evolution of cancer

C Jolly, P Van Loo - Genome biology, 2018 - Springer
Cancer arises through the accumulation of somatic mutations over time. An understanding of
the sequence of events during this process should allow both earlier diagnosis and better …