Synthetic and systems biology for microbial production of commodity chemicals

V Chubukov, A Mukhopadhyay, CJ Petzold… - NPJ systems biology …, 2016 - nature.com
The combination of synthetic and systems biology is a powerful framework to study
fundamental questions in biology and produce chemicals of immediate practical application …

Genetic manipulation strategies for ethanol production from bioconversion of lignocellulose waste

C Gong, L Cao, D Fang, J Zhang, MK Awasthi… - Bioresource …, 2022 - Elsevier
Lignocellulose waste was served as promising raw material for bioethanol production.
Bioethanol was considered to be a potential alternative energy to take the place of fossil …

Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21(DE3) carrying a synthetic metabolic pathway

P Dvorak, L Chrast, PI Nikel, R Fedr, K Soucek… - Microbial cell …, 2015 - Springer
Background Heterologous expression systems based on promoters inducible with isopropyl-
β-D-1-thiogalactopyranoside (IPTG), eg, Escherichia coli BL21 (DE3) and cognate LacI Q/P …

Negative feedback regulation of fatty acid production based on a malonyl-CoA sensor–actuator

D Liu, Y Xiao, BS Evans, F Zhang - ACS synthetic biology, 2015 - ACS Publications
Engineering metabolic biosynthetic pathways has enabled the microbial production of many
useful chemicals. However, pathway productivities and yields are often limited by metabolic …

Engineering microbial hosts for production of bacterial natural products

MM Zhang, Y Wang, EL Ang, H Zhao - Natural product reports, 2016 - pubs.rsc.org
Covering up to end 2015 Microbial fermentation provides an attractive alternative to
chemical synthesis for the production of structurally complex natural products. In most cases …

Metabolic Engineering of Escherichia coli for Production of Mixed-Acid Fermentation End Products

AH Förster, J Gescher - Frontiers in bioengineering and …, 2014 - frontiersin.org
Mixed-acid fermentation end products have numerous applications in biotechnology. This is
probably the main driving force for the development of multiple strains that are supposed to …

Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria

RJF Haft, DH Keating, T Schwaegler… - Proceedings of the …, 2014 - National Acad Sciences
The molecular mechanisms of ethanol toxicity and tolerance in bacteria, although important
for biotechnology and bioenergy applications, remain incompletely understood. Genetic …

Multivariate modular metabolic engineering for pathway and strain optimization

BW Biggs, B De Paepe, CNS Santos, M De Mey… - Current opinion in …, 2014 - Elsevier
Highlights•The rationale and underlying principles of multivariate modular metabolic
engineering (MMME) are given.•Several examples highlighting MMME's pathway …

Comprehensive characterization of toxicity of fermentative metabolites on microbial growth

B Wilbanks, CT Trinh - Biotechnology for biofuels, 2017 - Springer
Background Volatile carboxylic acids, alcohols, and esters are natural fermentative products,
typically derived from anaerobic digestion. These metabolites have important functional …

Enhancing Tolerance to Short-Chain Alcohols by Engineering the Escherichia coli AcrB Efflux Pump to Secrete the Non-native Substrate n-Butanol

MA Fisher, S Boyarskiy, MR Yamada, N Kong… - ACS synthetic …, 2014 - ACS Publications
The microbial conversion of sugars to fuels is a promising technology, but the byproducts of
biomass pretreatment processes and the fuels themselves are often toxic at industrially …