Hybrid epithelial/mesenchymal phenotypes promote metastasis and therapy resistance across carcinomas

MK Jolly, JA Somarelli, M Sheth, A Biddle… - Pharmacology & …, 2019 - Elsevier
Cancer metastasis and therapy resistance are the major unsolved clinical challenges, and
account for nearly all cancer-related deaths. Both metastasis and therapy resistance are …

Evolution of cellular differentiation: from hypotheses to models

P Márquez-Zacarías, RM Pineau, M Gomez… - Trends in Ecology & …, 2021 - cell.com
Cellular differentiation is one of the hallmarks of complex multicellularity, allowing individual
organisms to capitalize on among-cell functional diversity. The evolution of multicellularity is …

Network analysis identifies regulators of basal-like breast cancer reprogramming and endocrine therapy vulnerability

SR Choi, CY Hwang, J Lee, KH Cho - Cancer research, 2022 - AACR
Basal-like breast cancer is the most aggressive breast cancer subtype with the worst
prognosis. Despite its high recurrence rate, chemotherapy is the only treatment for basal-like …

[HTML][HTML] Analysis of the microarray gene expression for breast cancer progression after the application modified logistic regression

F Morais-Rodrigues, R Silv́erio-Machado, RB Kato… - Gene, 2020 - Elsevier
Methods based around statistics and linear algebra have been increasingly used in attempts
to address emerging questions in microarray literature. Microarray technology is a long-used …

[HTML][HTML] Interrogation of phenotypic plasticity between epithelial and mesenchymal states in breast cancer

S Bhatia, J Monkman, T Blick, C Pinto… - Journal of clinical …, 2019 - mdpi.com
Dynamic interconversions between transitional epithelial and mesenchymal states underpin
the epithelial mesenchymal plasticity (EMP) seen in some carcinoma cell systems. We have …

[HTML][HTML] A plausible accelerating function of intermediate states in cancer metastasis

H Goetz, JR Melendez-Alvarez, L Chen… - PLoS computational …, 2020 - journals.plos.org
Epithelial-to-mesenchymal transition (EMT) is a fundamental cellular process and plays an
essential role in development, tissue regeneration, and cancer metastasis. Interestingly …

[HTML][HTML] Preponderance of generalized chain functions in reconstructed Boolean models of biological networks

S Mitra, P Sil, A Subbaroyan, OC Martin, A Samal - Scientific Reports, 2024 - nature.com
Boolean networks (BNs) have been extensively used to model gene regulatory networks
(GRNs). The dynamics of BNs depend on the network architecture and regulatory logic rules …

[HTML][HTML] Quantifying cancer cell plasticity with gene regulatory networks and single-cell dynamics

SM Groves, V Quaranta - Frontiers in Network Physiology, 2023 - frontiersin.org
Phenotypic plasticity of cancer cells can lead to complex cell state dynamics during tumor
progression and acquired resistance. Highly plastic stem-like states may be inherently drug …

Realizing cancer precision medicine by integrating systems biology and nanomaterial engineering

JI Joo, M Choi, SH Jang, S Choi, SM Park… - Advanced …, 2020 - Wiley Online Library
Many clinical trials for cancer precision medicine have yielded unsatisfactory results due to
challenges such as drug resistance and low efficacy. Drug resistance is often caused by the …

[HTML][HTML] Awakening the HSC: dynamic modeling of HSC maintenance unravels regulation of the TP53 pathway and quiescence

N Ikonomi, SD Kühlwein, JD Schwab… - Frontiers in …, 2020 - frontiersin.org
Hematopoietic stem cells (HSCs) provide all types of blood cells during the entire life of the
organism. HSCs are mainly quiescent and can eventually enter the cell cycle to differentiate …