HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools
Motivation With the exponential growth of the life sciences literature, biomedical text mining
(BTM) has become an essential technology for accelerating the extraction of insights from …
(BTM) has become an essential technology for accelerating the extraction of insights from …
Chemical–protein relation extraction with ensembles of carefully tuned pretrained language models
The identification of chemical–protein interactions described in the literature is an important
task with applications in drug design, precision medicine and biotechnology. Manual …
task with applications in drug design, precision medicine and biotechnology. Manual …
WETM: A word embedding-based topic model with modified collapsed Gibbs sampling for short text
Short texts are a common source of knowledge, and the extraction of such valuable
information is beneficial for several purposes. Traditional topic models are incapable of …
information is beneficial for several purposes. Traditional topic models are incapable of …
Large language model based framework for automated extraction of genetic interactions from unstructured data
Extracting biological interactions from published literature helps us understand complex
biological systems, accelerate research, and support decision-making in drug or treatment …
biological systems, accelerate research, and support decision-making in drug or treatment …
HunFlair2 in a cross-corpus evaluation of named entity recognition and normalization tools
With the exponential growth of the life science literature, biomedical text mining (BTM) has
become an essential technology for accelerating the extraction of insights from publications …
become an essential technology for accelerating the extraction of insights from publications …
Extraction of gene-disease association from literature using BioBERT
C Deng, J Zou, J Deng, M Bai - The 2nd international conference on …, 2021 - dl.acm.org
With the rapid growth of biomedical literatures, there are a large amount of bio-text data to
be exploited. A wealth of knowledge concerning diseases associated with genes is present …
be exploited. A wealth of knowledge concerning diseases associated with genes is present …
[HTML][HTML] YTLR: Extracting yeast transcription factor-gene associations from the literature using automated literature readers
Cells adapt to environmental stresses mainly via transcription reprogramming. Correct
transcription control is mediated by the interactions between transcription factors (TF) and …
transcription control is mediated by the interactions between transcription factors (TF) and …
Ontology-aware biomedical relation extraction
Automatically extracting relationships from biomedical texts among multiple sorts of entities
is an essential task in biomedical natural language processing with numerous applications …
is an essential task in biomedical natural language processing with numerous applications …
Hierarchical network analysis of co-occurring bioentities in literature
H Yang, N Lee, B Park, J Park, J Lee, HS Jang… - Scientific Reports, 2022 - nature.com
Biomedical databases grow by more than a thousand new publications every day. The large
volume of biomedical literature that is being published at an unprecedented rate hinders the …
volume of biomedical literature that is being published at an unprecedented rate hinders the …
[PDF][PDF] Open Information Extraction Methodology for a New Curated Biomedical Literature Dataset
NAA Hassan, RAAAA Seoud… - International Journal of …, 2023 - pdfs.semanticscholar.org
The research articles contain a wealth of information about the interactions between
biomedical entities. However, manual relation extraction processing from the literature by …
biomedical entities. However, manual relation extraction processing from the literature by …