epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS‐based reduced representation bisulfite sequencing

F Gawehns, M Postuma, M van Antro… - Molecular Ecology …, 2022 - Wiley Online Library
Several reduced‐representation bisulfite sequencing methods have been developed in
recent years to determine cytosine methylation de novo in nonmodel species. Here, we …

[PDF][PDF] Epigenetic inheritance

CL Richards, M Pigliucci - A decade into the extended …, 2020 - ecologicalepigenetics.com
A decade ago, a landmark edited collection of essays made official the ongoing quest for an
Extended Evolutionary Synthesis (EES), beyond the classic Modern Synthesis that took …

Epigenetic effects of parasites and pesticides on captive and wild nestling birds

SM McNew, MT Boquete… - Ecology and …, 2021 - Wiley Online Library
Anthropogenic changes to the environment challenge animal populations to adapt to new
conditions and unique threats. While the study of adaptation has focused on genetic …

[HTML][HTML] A cost reduced variant of epi-genotyping by sequencing for studying DNA methylation in non-model organisms

O Werner, ÁS Prudencio… - Frontiers in Plant …, 2020 - frontiersin.org
Reference-free reduced representation bisulfite sequencing uses enzymatic digestion for
reducing genome complexity and allows detection of markers to study DNA methylation of a …

[HTML][HTML] Genetic and Epigenetic Differentiation Across Intertidal Gradients in the Foundation Plant Spartina alterniflora

JM Mounger, I van Riemsdijk, MT Boquete… - Frontiers in Ecology …, 2022 - frontiersin.org
Ecological genomics approaches have informed us about the structure of genetic diversity in
natural populations that might underlie patterns in trait variation. However, we still know …

epiGBS2: An improved protocol and automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing

F Gawehns, M Postuma, TP van Gurp… - BioRxiv, 2020 - biorxiv.org
Abstract epiGBS is an existing reduced representation bisulfite sequencing method to
determine cytosine methylation and genetic polymorphisms de novo. Here, we present …

DNA methylation dynamics in response to stress: An insight into stress-induced and stably inherited DNA methylation variants in asexual and sexual plants

M Van Antro - 2023 - search.proquest.com
All living organisms need to adjust to changes in their environment. In the case of plants,
they can adjust to their environment through the process of phenotypic plasticity or …

[PDF][PDF] EPIGENOMIC POLYMORPHISMS: THE DRIVERS OF DIVERSITY AND HETEROGENEITY

SA Dar, TUH Dar, N Akhter - researchgate.net
Supernumerary B chromosomes (B) are numerical chromosome polymorphisms reported in
several groups of eukaryotes, including plants, fungi and animals (Jones, 2017). B …