Horizontal gene transfer in eukaryotes: not if, but how much?

J Van Etten, D Bhattacharya - Trends in Genetics, 2020 - cell.com
Horizontal gene transfer (HGT), the movement of genetic material across branches of the
tree of life, is well established in prokaryotes and uncontroversial. This is explained in part …

The origin and early evolution of plants

AMC Bowles, CJ Williamson, TA Williams… - Trends in Plant …, 2023 - cell.com
Plant (archaeplastid) evolution has transformed the biosphere, but we are only now
beginning to learn how this took place through comparative genomics, phylogenetics, and …

Genome-wide signatures of adaptation to extreme environments in red algae

CH Cho, SI Park, TY Huang, Y Lee, C Ciniglia… - Nature …, 2023 - nature.com
The high temperature, acidity, and heavy metal-rich environments associated with hot
springs have a major impact on biological processes in resident cells. One group of …

Pyropia yezoensis genome reveals diverse mechanisms of carbon acquisition in the intertidal environment

D Wang, X Yu, K Xu, G Bi, M Cao, E Zelzion… - Nature …, 2020 - nature.com
Abstract Changes in atmospheric CO2 concentration have played a central role in algal and
plant adaptation and evolution. The commercially important red algal genus, Pyropia …

Red macroalgae in the genomic era

M Borg, SA Krueger‐Hadfield, C Destombe… - New …, 2023 - Wiley Online Library
Rhodophyta (or red algae) are a diverse and species‐rich group that forms one of three
major lineages in the Archaeplastida, a eukaryotic supergroup whose plastids arose from a …

Small RNA-omics for plant virus identification, virome reconstruction, and antiviral defense characterization

MM Pooggin - Frontiers in microbiology, 2018 - frontiersin.org
RNA interference (RNAi)-based antiviral defense generates small interfering RNAs that
represent the entire genome sequences of both RNA and DNA viruses as well as viroids …

[PDF][PDF] Insights into the Ancient Adaptation to Intertidal Environments by Red Algae Based on a Genomic and Multiomics Investigation of Neoporphyra haitanensis

H Chen, JSC Chu, J Chen, Q Luo… - Molecular Biology …, 2022 - academic.oup.com
Colonization of land from marine environments was a major transition for biological life on
Earth, and intertidal adaptation was a key evolutionary event in the transition from marine-to …

Extremophilic red algae as models for understanding adaptation to hostile environments and the evolution of eukaryotic life on the early earth

J Van Etten, CH Cho, HS Yoon… - Seminars in cell & …, 2023 - Elsevier
Extremophiles have always garnered great interest because of their exotic lifestyles and
ability to thrive at the physical limits of life. In hot springs environments, the Cyanidiophyceae …

A chromosome‐level genome assembly of Pyropia haitanensis (Bangiales, Rhodophyta)

M Cao, K Xu, X Yu, G Bi, Y Liu, F Kong… - Molecular ecology …, 2020 - Wiley Online Library
Abstract Pyropia haitanensis (Bangiales, Rhodophyta), a major economically important
marine crop, is also considered as an ideal research model of Rhodophyta to address …

MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes

RD Groussman, S Blaskowski, SN Coesel… - Scientific Data, 2023 - nature.com
Metatranscriptomics generates large volumes of sequence data about transcribed genes in
natural environments. Taxonomic annotation of these datasets depends on availability of …