Quantitative approaches for decoding the specificity of the human T cell repertoire
ZS Ghoreyshi, JT George - Frontiers in Immunology, 2023 - frontiersin.org
T cell receptor (TCR)-peptide-major histocompatibility complex (pMHC) interactions play a
vital role in initiating immune responses against pathogens, and the specificity of TCRpMHC …
vital role in initiating immune responses against pathogens, and the specificity of TCRpMHC …
Breast cancer dormancy: need for clinically relevant models to address current gaps in knowledge
Breast cancer is the most commonly diagnosed cancer in the USA. Although advances in
treatment over the past several decades have significantly improved the outlook for this …
treatment over the past several decades have significantly improved the outlook for this …
epiTCR: a highly sensitive predictor for TCR–peptide binding
Motivation Predicting the binding between T-cell receptor (TCR) and peptide presented by
human leucocyte antigen molecule is a highly challenging task and a key bottleneck in the …
human leucocyte antigen molecule is a highly challenging task and a key bottleneck in the …
Characterizing the interaction conformation between T-cell receptors and epitopes with deep learning
Computational modelling of the interactions between T-cell receptors (TCRs) and epitopes
is of great importance for immunotherapy and antigen discovery. However, current TCR …
is of great importance for immunotherapy and antigen discovery. However, current TCR …
Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen
VK Karnaukhov, DS Shcherbinin… - Nature Computational …, 2024 - nature.com
T cell receptor (TCR) recognition of foreign peptides presented by major histocompatibility
complex protein is a major event in triggering the adaptive immune response to pathogens …
complex protein is a major event in triggering the adaptive immune response to pathogens …
Defining and studying B cell receptor and TCR interactions
CG Rappazzo, ML Fernández-Quintero… - The Journal of …, 2023 - journals.aai.org
Abstract BCRs (Abs) and TCRs (or adaptive immune receptors [AIRs]) are the means by
which the adaptive immune system recognizes foreign and self-antigens, playing an integral …
which the adaptive immune system recognizes foreign and self-antigens, playing an integral …
A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity
Antigen immunogenicity and the specificity of binding of T-cell receptors to antigens are key
properties underlying effective immune responses. Here we propose diffRBM, an approach …
properties underlying effective immune responses. Here we propose diffRBM, an approach …
RACER-m leverages structural features for sparse T cell specificity prediction
Reliable prediction of T cell specificity against antigenic signatures is a formidable task,
complicated by the immense diversity of T cell receptor and antigen sequence space and …
complicated by the immense diversity of T cell receptor and antigen sequence space and …
Systems immunology of regulatory T cells: can one circuit explain it all?
S Tripathi, JS Tsang, K Park - Trends in Immunology, 2023 - cell.com
Regulatory T (Treg) cells play vital roles in immune homeostasis and response, including
discrimination between self-and non-self-antigens, containment of immunopathology, and …
discrimination between self-and non-self-antigens, containment of immunopathology, and …
DeepAIR: A deep learning framework for effective integration of sequence and 3D structure to enable adaptive immune receptor analysis
Structural docking between the adaptive immune receptors (AIRs), including T cell receptors
(TCRs) and B cell receptors (BCRs), and their cognate antigens are one of the most …
(TCRs) and B cell receptors (BCRs), and their cognate antigens are one of the most …