Industrial applications of enzyme biocatalysis: Current status and future aspects

JM Choi, SS Han, HS Kim - Biotechnology advances, 2015 - Elsevier
Enzymes are the most proficient catalysts, offering much more competitive processes
compared to chemical catalysts. The number of industrial applications for enzymes has …

In silico Strategies to Support Fragment-to-Lead Optimization in Drug Discovery

LR de Souza Neto, JT Moreira-Filho, BJ Neves… - Frontiers in …, 2020 - frontiersin.org
Fragment-based drug (or lead) discovery (FBDD or FBLD) has developed in the last two
decades to become a successful key technology in the pharmaceutical industry for early …

Unlocking the secret of lignin-enzyme interactions: Recent advances in developing state-of-the-art analytical techniques

X Zhao, X Meng, AJ Ragauskas, C Lai, Z Ling… - Biotechnology …, 2022 - Elsevier
Bioconversion of renewable lignocellulosics to produce liquid fuels and chemicals is one of
the most effective ways to solve the problem of fossil resource shortage, energy security, and …

Fluorescence resonance energy transfer at the single-molecule level

T Ha, J Fei, S Schmid, NK Lee… - Nature Reviews …, 2024 - nature.com
Fluorescence resonance energy transfer (FRET) is a powerful spectroscopic method for
measuring distances in the 2–8 nm range. Often, conformational changes and molecular …

Biophysics of protein evolution and evolutionary protein biophysics

T Sikosek, HS Chan - Journal of The Royal Society …, 2014 - royalsocietypublishing.org
The study of molecular evolution at the level of protein-coding genes often entails comparing
large datasets of sequences to infer their evolutionary relationships. Despite the importance …

Dynamical network of residue–residue contacts reveals coupled allosteric effects in recognition, catalysis, and mutation

U Doshi, MJ Holliday… - Proceedings of the …, 2016 - National Acad Sciences
Detailed understanding of how conformational dynamics orchestrates function in allosteric
regulation of recognition and catalysis remains ambiguous. Here, we simulate CypA using …

Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers

M de Boer, G Gouridis, R Vietrov, SL Begg… - Elife, 2019 - elifesciences.org
Substrate-binding proteins (SBPs) are associated with ATP-binding cassette importers and
switch from an open to a closed conformation upon substrate binding, providing specificity …

Conformational dynamics in substrate-binding domains influences transport in the ABC importer GlnPQ

G Gouridis, GK Schuurman-Wolters, E Ploetz… - Nature Structural & …, 2015 - nature.com
The conformational dynamics in ABC transporters is largely elusive. The ABC importer
GlnPQ from Lactococcus lactis has different covalently linked substrate-binding domains …

Functional protein nanostructures: a chemical toolbox

SL Kuan, FRG Bergamini, T Weil - Chemical Society Reviews, 2018 - pubs.rsc.org
Nature has evolved an optimal synthetic factory in the form of translational and
posttranslational processes by which millions of proteins with defined primary sequences …

Conformational selection in protein binding and function

TR Weikl, F Paul - Protein Science, 2014 - Wiley Online Library
Protein binding and function often involves conformational changes. Advanced nuclear
magnetic resonance (NMR) experiments indicate that these conformational changes can …