Recent advances in deep learning for protein-protein interaction analysis: A comprehensive review
M Lee - Molecules, 2023 - mdpi.com
Deep learning, a potent branch of artificial intelligence, is steadily leaving its transformative
imprint across multiple disciplines. Within computational biology, it is expediting progress in …
imprint across multiple disciplines. Within computational biology, it is expediting progress in …
GraphLncLoc: long non-coding RNA subcellular localization prediction using graph convolutional networks based on sequence to graph transformation
The subcellular localization of long non-coding RNAs (lncRNAs) is crucial for understanding
lncRNA functions. Most of existing lncRNA subcellular localization prediction methods use k …
lncRNA functions. Most of existing lncRNA subcellular localization prediction methods use k …
DeepCellEss: cell line-specific essential protein prediction with attention-based interpretable deep learning
Motivation Protein essentiality is usually accepted to be a conditional trait and strongly
affected by cellular environments. However, existing computational methods often do not …
affected by cellular environments. However, existing computational methods often do not …
'Bingo'—a large language model-and graph neural network-based workflow for the prediction of essential genes from protein data
The identification and characterization of essential genes are central to our understanding of
the core biological functions in eukaryotic organisms, and has important implications for the …
the core biological functions in eukaryotic organisms, and has important implications for the …
Comprehensive prediction and analysis of human protein essentiality based on a pretrained large language model
Human essential proteins (HEPs) are indispensable for individual viability and development.
However, experimental methods to identify HEPs are often costly, time consuming and labor …
However, experimental methods to identify HEPs are often costly, time consuming and labor …
ECDEP: identifying essential proteins based on evolutionary community discovery and subcellular localization
C Ye, Q Wu, S Chen, X Zhang, W Xu, Y Wu, Y Zhang… - BMC genomics, 2024 - Springer
Background In cellular activities, essential proteins play a vital role and are instrumental in
comprehending fundamental biological necessities and identifying pathogenic genes …
comprehending fundamental biological necessities and identifying pathogenic genes …
[HTML][HTML] AttentionEP: Predicting essential proteins via fusion of multiscale features by attention mechanisms
C Wu, B Lin, J Zhang, R Gao, R Song, ZP Liu - Computational and …, 2024 - Elsevier
Identifying essential proteins is of utmost importance in the field of biomedical research due
to their essential functions in cellular activities and their involvement in mechanisms related …
to their essential functions in cellular activities and their involvement in mechanisms related …
MEM‐FET: Essential protein prediction using membership feature and machine learning approach
AK Payra, B Saha, A Ghosh - Proteins: Structure, Function, and …, 2024 - Wiley Online Library
Proteins are played key roles in different functionalities in our daily life. All functional roles of
a protein are a bit enhanced in interaction compared to individuals. Identification of essential …
a protein are a bit enhanced in interaction compared to individuals. Identification of essential …
ACDMBI: A deep learning model based on community division and multi-source biological information fusion predicts essential proteins
P Lu, J Tian - Computational Biology and Chemistry, 2024 - Elsevier
Accurately identifying essential proteins is vital for drug research and disease diagnosis.
Traditional centrality methods and machine learning approaches often face challenges in …
Traditional centrality methods and machine learning approaches often face challenges in …
LDAGSO: Predicting IncRNA-Disease Associations from Graph Sequences and Disease Ontology via Deep Learning techniques
Recent studies have confirmed the significant effects of long non-coding RNAs (IncRNAs) in
understanding the mechanism of diseases. Because of the relatively small number of …
understanding the mechanism of diseases. Because of the relatively small number of …