[HTML][HTML] Genetic impacts on DNA methylation: research findings and future perspectives

S Villicaña, JT Bell - Genome biology, 2021 - Springer
Multiple recent studies highlight that genetic variants can have strong impacts on a
significant proportion of the human DNA methylome. Methylation quantitative trait loci, or …

[HTML][HTML] Effects of DNA methylation on gene expression and phenotypic traits in cattle: A review

J Zhang, H Sheng, C Hu, F Li, B Cai, Y Ma… - International Journal of …, 2023 - mdpi.com
Gene expression in cells is determined by the epigenetic state of chromatin. Therefore, the
study of epigenetic changes is very important to understand the regulatory mechanism of …

DNA methylation QTL mapping across diverse human tissues provides molecular links between genetic variation and complex traits

M Oliva, K Demanelis, Y Lu, M Chernoff, F Jasmine… - Nature …, 2023 - nature.com
Studies of DNA methylation (DNAm) in solid human tissues are relatively scarce; tissue-
specific characterization of DNAm is needed to understand its role in gene regulation and its …

[HTML][HTML] Methylation across the central dogma in health and diseases: new therapeutic strategies

R Liu, E Zhao, H Yu, C Yuan, MN Abbas… - Signal Transduction and …, 2023 - nature.com
The proper transfer of genetic information from DNA to RNA to protein is essential for cell-
fate control, development, and health. Methylation of DNA, RNAs, histones, and non-histone …

Fighting the battle against evolution: designing genetically modified organisms for evolutionary stability

M Arbel-Groissman, I Menuhin-Gruman, D Naki… - Trends in …, 2023 - cell.com
Synthetic biology has made significant progress in many areas, but a major challenge that
has received limited attention is the evolutionary stability of synthetic constructs made of …

Single-cell multi-omics of human preimplantation embryos shows susceptibility to glucocorticoids

C Zhao, S Biondic, K Vandal, ÅK Björklund… - Genome …, 2022 - genome.cshlp.org
The preconceptual, intrauterine, and early life environments can have a profound and long-
lasting impact on the developmental trajectories and health outcomes of the offspring. Given …

[HTML][HTML] iDNA-ABF: multi-scale deep biological language learning model for the interpretable prediction of DNA methylations

J Jin, Y Yu, R Wang, X Zeng, C Pang, Y Jiang, Z Li… - Genome biology, 2022 - Springer
In this study, we propose iDNA-ABF, a multi-scale deep biological language learning model
that enables the interpretable prediction of DNA methylations based on genomic sequences …

Deciphering the genetic code of DNA methylation

M Wang, V Ngo, W Wang - Briefings in bioinformatics, 2021 - academic.oup.com
DNA methylation plays crucial roles in many biological processes and abnormal DNA
methylation patterns are often observed in diseases. Recent studies have shed light on cis …

ALU non-B-DNA conformations, flipons, binary codes and evolution

A Herbert - Royal Society Open Science, 2020 - royalsocietypublishing.org
ALUs contribute to genetic diversity by altering DNA's linear sequence through
retrotransposition, recombination and repair. ALUs also have the potential to form alternative …

Epigenetic silencing of LncRNA ANRIL enhances liver fibrosis and HSC activation through activating AMPK pathway

JJ Yang, Y Yang, C Zhang, J Li… - Journal of Cellular and …, 2020 - Wiley Online Library
Abstract Long non‐coding RNAs (LncRNAs) and DNA methylation are important epigenetic
mark play a key role in liver fibrosis. Currently, how DNA methylation and LncRNAs control …