[HTML][HTML] Statistical and machine learning methods for spatially resolved transcriptomics data analysis
The recent advancement in spatial transcriptomics technology has enabled multiplexed
profiling of cellular transcriptomes and spatial locations. As the capacity and efficiency of the …
profiling of cellular transcriptomes and spatial locations. As the capacity and efficiency of the …
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
We used the 10x Genomics Visium platform to define the spatial topography of gene
expression in the six-layered human dorsolateral prefrontal cortex. We identified extensive …
expression in the six-layered human dorsolateral prefrontal cortex. We identified extensive …
[HTML][HTML] Evaluation of the suitability of RNAscope as a technique to measure gene expression in clinical diagnostics: a systematic review
S Atout, S Shurrab, C Loveridge - Molecular Diagnosis & Therapy, 2022 - Springer
Objective To evaluate the application of RNAscope in the clinical diagnostic field compared
to the current 'gold standard'methods employed for testing gene expression levels, including …
to the current 'gold standard'methods employed for testing gene expression levels, including …
[HTML][HTML] Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain
MN Tran, KR Maynard, A Spangler, LA Huuki… - Neuron, 2021 - cell.com
Single-cell gene expression technologies are powerful tools to study cell types in the human
brain, but efforts have largely focused on cortical brain regions. We therefore created a …
brain, but efforts have largely focused on cortical brain regions. We therefore created a …
A functional cellular framework for sex and estrous cycle-dependent gene expression and behavior
Sex hormones exert a profound influence on gendered behaviors. How individual sex
hormone-responsive neuronal populations regulate diverse sex-typical behaviors is unclear …
hormone-responsive neuronal populations regulate diverse sex-typical behaviors is unclear …
Single-cell dissection of schizophrenia reveals neurodevelopmental-synaptic link and transcriptional resilience associated cellular state
B Ruzicka, S Mohammadi… - Biological …, 2021 - biologicalpsychiatryjournal.com
Background Schizophrenia is a severe mental illness afflicting young adults just as they
approach their full potential, often resulting in a lifetime of severe disability. While many …
approach their full potential, often resulting in a lifetime of severe disability. While many …
[HTML][HTML] Data-driven identification of total RNA expression genes for estimation of RNA abundance in heterogeneous cell types highlighted in brain tissue
We define and identify a new class of control genes for next-generation sequencing called
total RNA expression genes (TREGs), which correlate with total RNA abundance in cell …
total RNA expression genes (TREGs), which correlate with total RNA abundance in cell …
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex
LA Huuki-Myers, A Spangler, NJ Eagles… - Science, 2024 - science.org
The molecular organization of the human neocortex historically has been studied in the
context of its histological layers. However, emerging spatial transcriptomic technologies …
context of its histological layers. However, emerging spatial transcriptomic technologies …
Decoding shared versus divergent transcriptomic signatures across cortico-amygdala circuitry in PTSD and depressive disorders
Objective: Posttraumatic stress disorder (PTSD) is a debilitating neuropsychiatric disease
that is highly comorbid with major depressive disorder (MDD) and bipolar disorder. The …
that is highly comorbid with major depressive disorder (MDD) and bipolar disorder. The …
[HTML][HTML] Klf5 defines alveolar epithelial type 1 cell lineage commitment during lung development and regeneration
DC Liberti, WA Liberti III, MM Kremp, IJ Penkala… - Developmental Cell, 2022 - cell.com
Alveolar epithelial cell fate decisions drive lung development and regeneration. Using
transcriptomic and epigenetic profiling coupled with genetic mouse and organoid models …
transcriptomic and epigenetic profiling coupled with genetic mouse and organoid models …