Cophylogenetic methods to untangle the evolutionary history of ecological interactions

W Dismukes, MP Braga, DH Hembry… - Annual Review of …, 2022 - annualreviews.org
Myriad branches in the tree of life are intertwined through ecological relationships. Biologists
have long hypothesized that intimate symbioses between lineages can influence …

Next-generation cophylogeny: unravelling eco-evolutionary processes

I Blasco-Costa, A Hayward, R Poulin… - Trends in Ecology & …, 2021 - cell.com
A fundamental question in evolutionary biology is how microevolutionary processes
translate into species diversification. Cophylogeny provides an appropriate framework to …

Assessing co‐diversification in host‐associated microbiomes

AH Moeller, JG Sanders, DD Sprockett… - Journal of Evolutionary …, 2023 - academic.oup.com
When lineages of hosts and microbial symbionts engage in intimate interactions over
evolutionary timescales, they can diversify in parallel (ie, co‐diversify), producing …

Phylogenetic framework for coevolutionary studies: a compass for exploring jungles of tangled trees

A Martínez-Aquino - Current Zoology, 2016 - academic.oup.com
Phylogenetics is used to detect past evolutionary events, from how species originated to
how their ecological interactions with other species arose, which can mirror cophylogenetic …

A statistical method for analysing cospeciation in tritrophic ecology using electrical circuit theory

C Nooney, S Barber, A Gusnanto… - Statistical Applications in …, 2017 - degruyter.com
We introduce a new method to test efficiently for cospeciation in tritrophic systems. Our
method utilises an analogy with electrical circuit theory to reduce higher order systems into …

Next-generation cophylogeny: unravelling eco-evolutionary processes

IB Costa, A Hayward, R Poulin, JA Balbuena - 2021 - munin.uit.no
A fundamental question in evolutionary biology is how microevolutionary processes
translate into species diversification. Cophylogeny provides an appropriate framework to …

Cluster Detection by Lifting with Application to Phylogenetics

N Bozkus - 2018 - etheses.whiterose.ac.uk
In this thesis, we propose a new algorithm which automatically detects the number of
clusters in a tree structure data set by denoising some generalized node values in the tree …

Supplementary material for “A statistical method for analysing cospeciation in tritrophic ecology using electrical circuit theory”

C Nooney, S Barber, A Gusnanto, WR Gilks - degruyter.com
The rejection rate plots for Simulation Method 3 in section 3.2 of the main paper are
displayed in Figure S3. The rejection rates increase as the systems become more …

[PDF][PDF] Cophylogenetic analysis of dated trees

B Drinkwater - 2016 - core.ac.uk
Parasites and the associations they form with their hosts is an important area of research
due to the associated health risks which parasites pose to the human population. The …

Statistical Analysis of Coevolution in Protein Structure and in Ecology

C Nooney - 2016 - etheses.whiterose.ac.uk
In this thesis we explore the theory of coevolution. Yip et al.(2008) define coevolution to be
the change in one biological object as a result of the change in one or more associated …