Genetics and genomics of reproductive performance in dairy and beef cattle

DP Berry, E Wall, JE Pryce - animal, 2014 - cambridge.org
Excellent reproductive performance in both males and females is fundamental to profitable
dairy and beef production systems. In this review we undertook a meta-analysis of genetic …

Evaluation of measures of correctness of genotype imputation in the context of genomic prediction: a review of livestock applications

MPL Calus, AC Bouwman, JM Hickey, RF Veerkamp… - animal, 2014 - cambridge.org
In livestock, many studies have reported the results of imputation to 50k single nucleotide
polymorphism (SNP) genotypes for animals that are genotyped with low-density SNP …

Imputation of high-density genotypes in the Fleckvieh cattle population

H Pausch, B Aigner, R Emmerling, C Edel… - Genetics Selection …, 2013 - Springer
Background Currently, genome-wide evaluation of cattle populations is based on SNP-
genotyping using~ 54 000 SNP. Increasing the number of markers might improve genomic …

BREEDING AND GENETICS SYMPOSIUM: Networks and pathways to guide genomic selection

WM Snelling, RA Cushman, JW Keele… - Journal of Animal …, 2013 - academic.oup.com
Many traits affecting profitability and sustainability of meat, milk, and fiber production are
polygenic, with no single gene having an overwhelming influence on observed variation. No …

Grid search approach to discriminate between old and recent inbreeding using phenotypic, pedigree and genomic information

P Sumreddee, EH Hay, S Toghiani, A Roberts… - BMC genomics, 2021 - Springer
Background Although inbreeding caused by the mating of animals related through a recent
common ancestor is expected to have more harmful effects on phenotypes than ancient …

Inbreeding depression in line 1 Hereford cattle population using pedigree and genomic information

P Sumreddee, S Toghiani, EH Hay… - Journal of animal …, 2019 - academic.oup.com
This study aimed at assessing inbreeding and its effect on growth and fertility traits using the
longtime closed line 1 Hereford cattle population. Inbreeding was estimated based on …

Inbreeding calculated with runs of homozygosity suggests chromosome-specific inbreeding depression regions in line 1 Hereford

B Pilon, K Hinterneder, EHA Hay, B Fragomeni - Animals, 2021 - mdpi.com
Simple Summary Inbreeding depression is the decreased fitness of offspring of closely
related individuals. It is a common problem in the livestock industry as a consequence of …

Within‐and across‐breed imputation of high‐density genotypes in dairy and beef cattle from medium‐and low‐density genotypes

DP Berry, MC McClure… - Journal of Animal Breeding …, 2014 - Wiley Online Library
The objective of this study was to evaluate, using three different genotype density panels,
the accuracy of imputation from lower‐to higher‐density genotypes in dairy and beef cattle …

Accuracy of genome-wide imputation in Braford and Hereford beef cattle

ML Piccoli, J Braccini, FF Cardoso, M Sargolzaei… - BMC genetics, 2014 - Springer
Background Strategies for imputing genotypes from the Illumina-Bovine3K, Illumina-
BovineLD (6K), BeefLD-GGP (8K), a non-commercial-15K and IndicusLD-GGP (20K) to …

Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels

JL Gualdrón Duarte, RO Bates, CW Ernst, NE Raney… - BMC genetics, 2013 - Springer
Background F 2 resource populations have been used extensively to map QTL segregating
between pig breeds. A limitation associated with the use of these resource populations for …