Genetics and genomics of reproductive performance in dairy and beef cattle
Excellent reproductive performance in both males and females is fundamental to profitable
dairy and beef production systems. In this review we undertook a meta-analysis of genetic …
dairy and beef production systems. In this review we undertook a meta-analysis of genetic …
Evaluation of measures of correctness of genotype imputation in the context of genomic prediction: a review of livestock applications
In livestock, many studies have reported the results of imputation to 50k single nucleotide
polymorphism (SNP) genotypes for animals that are genotyped with low-density SNP …
polymorphism (SNP) genotypes for animals that are genotyped with low-density SNP …
Imputation of high-density genotypes in the Fleckvieh cattle population
H Pausch, B Aigner, R Emmerling, C Edel… - Genetics Selection …, 2013 - Springer
Background Currently, genome-wide evaluation of cattle populations is based on SNP-
genotyping using~ 54 000 SNP. Increasing the number of markers might improve genomic …
genotyping using~ 54 000 SNP. Increasing the number of markers might improve genomic …
BREEDING AND GENETICS SYMPOSIUM: Networks and pathways to guide genomic selection–
WM Snelling, RA Cushman, JW Keele… - Journal of Animal …, 2013 - academic.oup.com
Many traits affecting profitability and sustainability of meat, milk, and fiber production are
polygenic, with no single gene having an overwhelming influence on observed variation. No …
polygenic, with no single gene having an overwhelming influence on observed variation. No …
Grid search approach to discriminate between old and recent inbreeding using phenotypic, pedigree and genomic information
P Sumreddee, EH Hay, S Toghiani, A Roberts… - BMC genomics, 2021 - Springer
Background Although inbreeding caused by the mating of animals related through a recent
common ancestor is expected to have more harmful effects on phenotypes than ancient …
common ancestor is expected to have more harmful effects on phenotypes than ancient …
Inbreeding depression in line 1 Hereford cattle population using pedigree and genomic information
P Sumreddee, S Toghiani, EH Hay… - Journal of animal …, 2019 - academic.oup.com
This study aimed at assessing inbreeding and its effect on growth and fertility traits using the
longtime closed line 1 Hereford cattle population. Inbreeding was estimated based on …
longtime closed line 1 Hereford cattle population. Inbreeding was estimated based on …
Inbreeding calculated with runs of homozygosity suggests chromosome-specific inbreeding depression regions in line 1 Hereford
B Pilon, K Hinterneder, EHA Hay, B Fragomeni - Animals, 2021 - mdpi.com
Simple Summary Inbreeding depression is the decreased fitness of offspring of closely
related individuals. It is a common problem in the livestock industry as a consequence of …
related individuals. It is a common problem in the livestock industry as a consequence of …
Within‐and across‐breed imputation of high‐density genotypes in dairy and beef cattle from medium‐and low‐density genotypes
DP Berry, MC McClure… - Journal of Animal Breeding …, 2014 - Wiley Online Library
The objective of this study was to evaluate, using three different genotype density panels,
the accuracy of imputation from lower‐to higher‐density genotypes in dairy and beef cattle …
the accuracy of imputation from lower‐to higher‐density genotypes in dairy and beef cattle …
Accuracy of genome-wide imputation in Braford and Hereford beef cattle
Background Strategies for imputing genotypes from the Illumina-Bovine3K, Illumina-
BovineLD (6K), BeefLD-GGP (8K), a non-commercial-15K and IndicusLD-GGP (20K) to …
BovineLD (6K), BeefLD-GGP (8K), a non-commercial-15K and IndicusLD-GGP (20K) to …
Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels
JL Gualdrón Duarte, RO Bates, CW Ernst, NE Raney… - BMC genetics, 2013 - Springer
Background F 2 resource populations have been used extensively to map QTL segregating
between pig breeds. A limitation associated with the use of these resource populations for …
between pig breeds. A limitation associated with the use of these resource populations for …