Stochastic switching in biology: from genotype to phenotype
PC Bressloff - Journal of Physics A: Mathematical and …, 2017 - iopscience.iop.org
There has been a resurgence of interest in non-equilibrium stochastic processes in recent
years, driven in part by the observation that the number of molecules (genes, mRNA …
years, driven in part by the observation that the number of molecules (genes, mRNA …
[图书][B] Stochastic processes in cell biology
PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …
components of a living cell operate in a highly noisy environment. What are the specific …
A general view on double limits in differential equations
In this paper, we review several results from singularly perturbed differential equations with
multiple small parameters. In addition, we develop a general conceptual framework to …
multiple small parameters. In addition, we develop a general conceptual framework to …
Piecewise deterministic Markov process—recent results
R Azaïs, JB Bardet, A Génadot, N Krell… - Esaim: Proceedings, 2014 - esaim-proc.org
We give a short overview of recent results on a specific class of Markov process: the
Piecewise Deterministic Markov Processes (PDMPs). We first recall the definition of these …
Piecewise Deterministic Markov Processes (PDMPs). We first recall the definition of these …
Path integrals and large deviations in stochastic hybrid systems
PC Bressloff, JM Newby - Physical Review E, 2014 - APS
We construct a path-integral representation of solutions to a stochastic hybrid system,
consisting of one or more continuous variables evolving according to a piecewise …
consisting of one or more continuous variables evolving according to a piecewise …
[图书][B] Stochastic dynamics in computational biology
S Winkelmann, C Schütte - 2020 - Springer
Computational biology is the science of developing mathematical models and numerical
simulation techniques to understand biological and biochemical systems. Since the early …
simulation techniques to understand biological and biochemical systems. Since the early …
[HTML][HTML] Stochastic distinguishability of Markovian trajectories
The ability to distinguish between stochastic systems based on their trajectories is crucial in
thermodynamics, chemistry, and biophysics. The Kullback–Leibler (KL) divergence, D KL AB …
thermodynamics, chemistry, and biophysics. The Kullback–Leibler (KL) divergence, D KL AB …
Large deviations for multi-scale jump-diffusion processes
R Kumar, L Popovic - Stochastic Processes and their Applications, 2017 - Elsevier
We obtain large deviation results for a two time-scale model of jump-diffusion processes.
The processes on the two time scales are fully inter-dependent, the slow process has small …
The processes on the two time scales are fully inter-dependent, the slow process has small …
On the Hamiltonian structure of large deviations in stochastic hybrid systems
PC Bressloff, O Faugeras - Journal of Statistical Mechanics …, 2017 - iopscience.iop.org
We present a new derivation of the classical action underlying a large deviation principle
(LDP) for a stochastic hybrid system, which couples a piecewise deterministic dynamical …
(LDP) for a stochastic hybrid system, which couples a piecewise deterministic dynamical …
Non-reversible processes: GENERIC, hypocoercivity and fluctuations
We consider two approaches to study non-reversible Markov processes, namely the
hypocoercivity theory and general equations for non-equilibrium reversible–irreversible …
hypocoercivity theory and general equations for non-equilibrium reversible–irreversible …