Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities
Various next generation sequencing (NGS) based strategies have been successfully used in
the recent past for tracing origins and understanding the evolution of infectious agents …
the recent past for tracing origins and understanding the evolution of infectious agents …
[HTML][HTML] Long walk to genomics: History and current approaches to genome sequencing and assembly
Genomes represent the starting point of genetic studies. Since the discovery of DNA
structure, scientists have devoted great efforts to determine their sequence in an exact way …
structure, scientists have devoted great efforts to determine their sequence in an exact way …
[HTML][HTML] Twelve quick steps for genome assembly and annotation in the classroom
Eukaryotic genome sequencing and de novo assembly, once the exclusive domain of well-
funded international consortia, have become increasingly affordable, thus fitting the budgets …
funded international consortia, have become increasingly affordable, thus fitting the budgets …
Molluscan genomics: the road so far and the way forward
Mollusca is the second most species-rich phylum within the metazoans, displaying critical
economic, ecological and scientific importance. Yet, they are still largely underrepresented …
economic, ecological and scientific importance. Yet, they are still largely underrepresented …
Plant mitochondrial genome map (PMGmap): A software tool for the comprehensive visualization of coding, noncoding and genome features of plant mitochondrial …
X Zhang, H Chen, Y Ni, B Wu, J Li… - Molecular Ecology …, 2024 - Wiley Online Library
Tools for visualizing genomes are essential for investigating genomic features and their
interactions. Currently, tools designed originally for animal mitogenomes and plant …
interactions. Currently, tools designed originally for animal mitogenomes and plant …
The changing face of genome assemblies: Guidance on achieving high‐quality reference genomes
The quality of genome assemblies has improved rapidly in recent years due to continual
advances in sequencing technology, assembly approaches, and quality control. In the field …
advances in sequencing technology, assembly approaches, and quality control. In the field …
A workflow for generating multi-strain genome-scale metabolic models of prokaryotes
Genome-scale models (GEMs) of bacterial strains' metabolism have been formulated and
used over the past 20 years. Recently, with the number of genome sequences exponentially …
used over the past 20 years. Recently, with the number of genome sequences exponentially …
A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia illucens L.)
TN Generalovic, SA McCarthy, IA Warren, JMD Wood… - G3, 2021 - academic.oup.com
Abstract Hermetia illucens L.(Diptera: Stratiomyidae), the Black Soldier Fly (BSF) is an
increasingly important species for bioconversion of organic material into animal feed. We …
increasingly important species for bioconversion of organic material into animal feed. We …
bitacora: A comprehensive tool for the identification and annotation of gene families in genome assemblies
Gene annotation is a critical bottleneck in genomic research, especially for the
comprehensive study of very large gene families in the genomes of nonmodel organisms …
comprehensive study of very large gene families in the genomes of nonmodel organisms …
[HTML][HTML] First draft genome assembly of the desert locust, Schistocerca gregaria
Background: At the time of publication, the most devastating desert locust crisis in decades
is affecting East Africa, the Arabian Peninsula and South-West Asia. The situation is …
is affecting East Africa, the Arabian Peninsula and South-West Asia. The situation is …