Improvements, trends, and new ideas in molecular docking: 2012–2013 in review

E Yuriev, J Holien, PA Ramsland - Journal of Molecular …, 2015 - Wiley Online Library
Molecular docking is a computational method for predicting the placement of ligands in the
binding sites of their receptor (s). In this review, we discuss the methodological …

Deciphering how Cpl-7 cell wall-binding repeats recognize the bacterial peptidoglycan

N Bustamante, M Iglesias-Bexiga, N Bernardo-García… - Scientific reports, 2017 - nature.com
Endolysins, the cell wall lytic enzymes encoded by bacteriophages to release the phage
progeny, are among the top alternatives to fight against multiresistant pathogenic bacteria; …

Hakin-1, a new specific small-molecule inhibitor for the E3 ubiquitin-ligase Hakai, inhibits carcinoma growth and progression

O Martinez-Iglesias, A Casas-Pais, R Castosa… - Cancers, 2020 - mdpi.com
The requirement of the E3 ubiquitin-ligase Hakai for the ubiquitination and subsequent
degradation of E-cadherin has been associated with enhanced epithelial-to-mesenchymal …

Esterase LpEst1 from Lactobacillus plantarum: A Novel and Atypical Member of the αβ Hydrolase Superfamily of Enzymes

Y Alvarez, M Esteban-Torres, A Cortes-Cabrera… - PLoS …, 2014 - journals.plos.org
The genome of the lactic acid bacterium Lactobacillus plantarum WCFS1 reveals the
presence of a rich repertoire of esterases and lipases highlighting their important role in …

Aggregated compound biological signatures facilitate phenotypic drug discovery and target elucidation

A Cortes Cabrera, D Lucena-Agell… - ACS Chemical …, 2016 - ACS Publications
Predicting the cellular response of compounds is a challenge central to the discovery of new
drugs. Compound biological signatures have risen as a way of representing the perturbation …

Microwave-assisted synthesis of potent PDE7 inhibitors containing a thienopyrimidin-4-amine scaffold

AI Sanchez, R Meneses, JM Minguez… - Organic & …, 2014 - pubs.rsc.org
Microwave-assisted synthesis of potent PDE7 inhibitors containing a thienopyrimidin-4-amine
scaffold - Organic & Biomolecular Chemistry (RSC Publishing) DOI:10.1039/C4OB00175C …

ALFA: Automatic ligand flexibility assignment

J Klett, A Cortés-Cabrera, R Gil-Redondo, F Gago… - 2014 - ACS Publications
ALFA is a fast computational tool for the conformational analysis of small molecules that
uses a custom-made iterative algorithm to provide a set of representative conformers in an …

Computational multi-target drug design

A Abdolmaleki, F Shiri, JB Ghasemi - Multi-target drug design using chem …, 2019 - Springer
Multi-target (mt) therapy is an attractive approach as well as a challenging task in drug
discovery research and pharmaceutical industry. The multi-target drug design strategy is an …

Enantioselective oxidation of galactitol 1-phosphate by galactitol-1-phosphate 5-dehydrogenase from Escherichia coli

R Benavente, M Esteban-Torres… - … Section D: Biological …, 2015 - journals.iucr.org
Galactitol-1-phosphate 5-dehydrogenase (GPDH) is a polyol dehydrogenase that belongs to
the medium-chain dehydrogenase/reductase (MDR) superfamily. It catalyses the Zn2+-and …

Molecular docking at a glance

M Hamzeh-Mivehroud, B Sokouti… - Methods and Algorithms …, 2016 - igi-global.com
The current chapter introduces different aspects of molecular docking technique in order to
give an overview to the readers about the topics which will be dealt with throughout this …