Methods for biological data integration: perspectives and challenges

V Gligorijević, N Pržulj - Journal of the Royal Society …, 2015 - royalsocietypublishing.org
Rapid technological advances have led to the production of different types of biological data
and enabled construction of complex networks with various types of interactions between …

Somatic driver mutations in melanoma

BY Reddy, DM Miller, H Tsao - Cancer, 2017 - Wiley Online Library
Melanoma has one of the highest somatic mutational burdens among solid malignancies.
Although the rapid progress in genomic research has contributed immensely to our …

DawnRank: discovering personalized driver genes in cancer

JP Hou, J Ma - Genome medicine, 2014 - Springer
Large-scale cancer genomic studies have revealed that the genetic heterogeneity of the
same type of cancer is greater than previously thought. A key question in cancer genomics is …

Predicting cancer drug response using a recommender system

C Suphavilai, D Bertrand, N Nagarajan - Bioinformatics, 2018 - academic.oup.com
Motivation As we move toward an era of precision medicine, the ability to predict patient-
specific drug responses in cancer based on molecular information such as gene expression …

Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes

F Cheng, J Zhao, Z Zhao - Briefings in bioinformatics, 2016 - academic.oup.com
Cancer is often driven by the accumulation of genetic alterations, including single nucleotide
variants, small insertions or deletions, gene fusions, copy-number variations, and large …

[HTML][HTML] The emerging potential for network analysis to inform precision cancer medicine

K Ozturk, M Dow, DE Carlin, R Bejar… - Journal of molecular …, 2018 - Elsevier
Precision cancer medicine promises to tailor clinical decisions to patients using genomic
information. Indeed, successes of drugs targeting genetic alterations in tumors, such as …

[HTML][HTML] Characterization of potential driver mutations involved in human breast cancer by computational approaches

BK Rajendran, CX Deng - Oncotarget, 2017 - ncbi.nlm.nih.gov
Breast cancer is the second most frequently occurring form of cancer and is also the second
most lethal cancer in women worldwide. A genetic mutation is one of the key factors that …

Understanding the cellular roles of Fyn-related kinase (FRK): implications in cancer biology

RK Goel, KE Lukong - Cancer and Metastasis Reviews, 2016 - Springer
The non-receptor tyrosine kinase Fyn-related kinase (FRK) is a member of the BRK family
kinases (BFKs) and is distantly related to the Src family kinases (SFKs). FRK was first …

HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology

R Shrestha, E Hodzic, T Sauerwald, P Dao… - Genome …, 2017 - genome.cshlp.org
Prioritizing molecular alterations that act as drivers of cancer remains a crucial bottleneck in
therapeutic development. Here we introduce HIT'nDRIVE, a computational method that …

DACH1 suppresses breast cancer as a negative regulator of CD44

H Xu, S Yu, X Yuan, J Xiong, D Kuang, RG Pestell… - Scientific Reports, 2017 - nature.com
Abstract Dachshund homolog 1 (DACH1), a key cell fate determination factor, contributes to
tumorigenesis, invasion, metastasis of human breast neoplasm. However, the exact …