Methods for biological data integration: perspectives and challenges
V Gligorijević, N Pržulj - Journal of the Royal Society …, 2015 - royalsocietypublishing.org
Rapid technological advances have led to the production of different types of biological data
and enabled construction of complex networks with various types of interactions between …
and enabled construction of complex networks with various types of interactions between …
DawnRank: discovering personalized driver genes in cancer
JP Hou, J Ma - Genome medicine, 2014 - Springer
Large-scale cancer genomic studies have revealed that the genetic heterogeneity of the
same type of cancer is greater than previously thought. A key question in cancer genomics is …
same type of cancer is greater than previously thought. A key question in cancer genomics is …
Predicting cancer drug response using a recommender system
Motivation As we move toward an era of precision medicine, the ability to predict patient-
specific drug responses in cancer based on molecular information such as gene expression …
specific drug responses in cancer based on molecular information such as gene expression …
Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes
Cancer is often driven by the accumulation of genetic alterations, including single nucleotide
variants, small insertions or deletions, gene fusions, copy-number variations, and large …
variants, small insertions or deletions, gene fusions, copy-number variations, and large …
[HTML][HTML] The emerging potential for network analysis to inform precision cancer medicine
Precision cancer medicine promises to tailor clinical decisions to patients using genomic
information. Indeed, successes of drugs targeting genetic alterations in tumors, such as …
information. Indeed, successes of drugs targeting genetic alterations in tumors, such as …
[HTML][HTML] Characterization of potential driver mutations involved in human breast cancer by computational approaches
BK Rajendran, CX Deng - Oncotarget, 2017 - ncbi.nlm.nih.gov
Breast cancer is the second most frequently occurring form of cancer and is also the second
most lethal cancer in women worldwide. A genetic mutation is one of the key factors that …
most lethal cancer in women worldwide. A genetic mutation is one of the key factors that …
Understanding the cellular roles of Fyn-related kinase (FRK): implications in cancer biology
The non-receptor tyrosine kinase Fyn-related kinase (FRK) is a member of the BRK family
kinases (BFKs) and is distantly related to the Src family kinases (SFKs). FRK was first …
kinases (BFKs) and is distantly related to the Src family kinases (SFKs). FRK was first …
HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology
Prioritizing molecular alterations that act as drivers of cancer remains a crucial bottleneck in
therapeutic development. Here we introduce HIT'nDRIVE, a computational method that …
therapeutic development. Here we introduce HIT'nDRIVE, a computational method that …
DACH1 suppresses breast cancer as a negative regulator of CD44
H Xu, S Yu, X Yuan, J Xiong, D Kuang, RG Pestell… - Scientific Reports, 2017 - nature.com
Abstract Dachshund homolog 1 (DACH1), a key cell fate determination factor, contributes to
tumorigenesis, invasion, metastasis of human breast neoplasm. However, the exact …
tumorigenesis, invasion, metastasis of human breast neoplasm. However, the exact …