Microbial diversity in extreme environments

WS Shu, LN Huang - Nature Reviews Microbiology, 2022 - nature.com
A wide array of microorganisms, including many novel, phylogenetically deeply rooted taxa,
survive and thrive in extreme environments. These unique and reduced-complexity …

Deciphering diversity indices for a better understanding of microbial communities

BR Kim, J Shin, RB Guevarra, JH Lee… - … of Microbiology and …, 2017 - koreascience.kr
The past decades have been a golden era during which great tasks were accomplished in
the field of microbiology, including food microbiology. In the past, culture-dependent …

[HTML][HTML] Post-antibiotic gut mucosal microbiome reconstitution is impaired by probiotics and improved by autologous FMT

J Suez, N Zmora, G Zilberman-Schapira, U Mor… - Cell, 2018 - cell.com
Probiotics are widely prescribed for prevention of antibiotics-associated dysbiosis and
related adverse effects. However, probiotic impact on post-antibiotic reconstitution of the gut …

Diet tracing in ecology: Method comparison and selection

JM Nielsen, EL Clare, B Hayden… - Methods in Ecology …, 2018 - Wiley Online Library
Determining diet is a key prerequisite for understanding species interactions, food web
structure and ecological dynamics. In recent years, there has been considerable …

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

A Apprill, S McNally, R Parsons, L Weber - Aquatic Microbial Ecology, 2015 - int-res.com
High-throughput sequencing of small subunit ribosomal RNA (SSU rRNA) genes from
marine environments is a widely applied method used to uncover the composition of …

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

Y Shi, Y Li, X Xiang, R Sun, T Yang, D He, K Zhang… - Microbiome, 2018 - Springer
Background The relative importance of stochasticity versus determinism in soil bacterial
communities is unclear, as are the possible influences that alter the balance between these …

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

D Berry, S Widder - Frontiers in microbiology, 2014 - frontiersin.org
Co-occurrence networks produced from microbial survey sequencing data are frequently
used to identify interactions between community members. While this approach has …

[HTML][HTML] Traditionally fermented pickles: How the microbial diversity associated with their nutritional and health benefits?

SS Behera, AF El Sheikha, R Hammami… - Journal of Functional …, 2020 - Elsevier
Historically, pickling is one of the oldest preservation methods of several foodstuffs such as
vegetables, fruits, fish, and meat. Pickling imparts unique and desirable changes in flavor …

Life in the “plastisphere”: microbial communities on plastic marine debris

ER Zettler, TJ Mincer… - Environmental science & …, 2013 - ACS Publications
Plastics are the most abundant form of marine debris, with global production rising and
documented impacts in some marine environments, but the influence of plastic on open …

Phylogenetically novel uncultured microbial cells dominate earth microbiomes

KG Lloyd, AD Steen, J Ladau, J Yin, L Crosby - MSystems, 2018 - Am Soc Microbiol
To describe a microbe's physiology, including its metabolism, environmental roles, and
growth characteristics, it must be grown in a laboratory culture. Unfortunately, many …