Genome-scale models in human metabologenomics

A Mardinoglu, BØ Palsson - Nature Reviews Genetics, 2024 - nature.com
Metabologenomics integrates metabolomics with other omics data types to comprehensively
study the genetic and environmental factors that influence metabolism. These multi-omics …

Cancer, metastasis, and the epigenome

S Kiri, T Ryba - Molecular Cancer, 2024 - Springer
Cancer is the second leading cause of death worldwide and disease burden is expected to
increase globally throughout the next several decades, with the majority of cancer-related …

Multi-scale signaling and tumor evolution in high-grade gliomas

J Liu, S Cao, KJ Imbach, MA Gritsenko, TSM Lih… - Cancer cell, 2024 - cell.com
Although genomic anomalies in glioblastoma (GBM) have been well studied for over a
decade, its 5-year survival rate remains lower than 5%. We seek to expand the molecular …

A prognostic neural epigenetic signature in high-grade glioma

R Drexler, R Khatri, T Sauvigny, M Mohme, CL Maire… - Nature Medicine, 2024 - nature.com
Neural–tumor interactions drive glioma growth as evidenced in preclinical models, but
clinical validation is limited. We present an epigenetically defined neural signature of …

Epigenomic heterogeneity as a source of tumour evolution

M Laisné, M Lupien, C Vallot - Nature Reviews Cancer, 2024 - nature.com
In the past decade, remarkable progress in cancer medicine has been achieved by the
development of treatments that target DNA sequence variants. However, a purely genetic …

Tumour evolution and microenvironment interactions in 2D and 3D space

CK Mo, J Liu, S Chen, E Storrs, ALN Targino da Costa… - Nature, 2024 - nature.com
To study the spatial interactions among cancer and non-cancer cells 1, we here examined a
cohort of 131 tumour sections from 78 cases across 6 cancer types by Visium spatial …

Transient loss of Polycomb components induces an epigenetic cancer fate

V Parreno, V Loubiere, B Schuettengruber, L Fritsch… - Nature, 2024 - nature.com
Although cancer initiation and progression are generally associated with the accumulation
of somatic mutations,, substantial epigenomic alterations underlie many aspects of …

The Wild West of spike-in normalization

LA Patel, Y Cao, EM Mendenhall, C Benner… - Nature …, 2024 - nature.com
The proper use of spike-in normalization in ChIP-seq improves sensitivity for detecting
genome-wide changes between conditions, but improper use is common, calling some …

Targeting methionine metabolism in cancer: opportunities and challenges

P Bin, C Wang, H Zhang, Y Yan, W Ren - Trends in Pharmacological …, 2024 - cell.com
Reprogramming of methionine metabolism is a conserved hallmark of tumorigenesis.
Recent studies have revealed mechanisms regulating methionine metabolism within the …

Pharmacological activation of STAT1-GSDME pyroptotic circuitry reinforces epigenetic immunotherapy for hepatocellular carcinoma

Y Tu, H Wu, C Zhong, Y Liu, Z Xiong, S Chen, J Wang… - Gut, 2024 - gut.bmj.com
Background Genomic screening uncovered interferon-gamma (IFNγ) pathway defects in
tumours refractory to immune checkpoint blockade (ICB). However, its non-mutational …