Genome-scale models in human metabologenomics
A Mardinoglu, BØ Palsson - Nature Reviews Genetics, 2024 - nature.com
Metabologenomics integrates metabolomics with other omics data types to comprehensively
study the genetic and environmental factors that influence metabolism. These multi-omics …
study the genetic and environmental factors that influence metabolism. These multi-omics …
Cancer, metastasis, and the epigenome
S Kiri, T Ryba - Molecular Cancer, 2024 - Springer
Cancer is the second leading cause of death worldwide and disease burden is expected to
increase globally throughout the next several decades, with the majority of cancer-related …
increase globally throughout the next several decades, with the majority of cancer-related …
Multi-scale signaling and tumor evolution in high-grade gliomas
Although genomic anomalies in glioblastoma (GBM) have been well studied for over a
decade, its 5-year survival rate remains lower than 5%. We seek to expand the molecular …
decade, its 5-year survival rate remains lower than 5%. We seek to expand the molecular …
A prognostic neural epigenetic signature in high-grade glioma
Neural–tumor interactions drive glioma growth as evidenced in preclinical models, but
clinical validation is limited. We present an epigenetically defined neural signature of …
clinical validation is limited. We present an epigenetically defined neural signature of …
Epigenomic heterogeneity as a source of tumour evolution
In the past decade, remarkable progress in cancer medicine has been achieved by the
development of treatments that target DNA sequence variants. However, a purely genetic …
development of treatments that target DNA sequence variants. However, a purely genetic …
Tumour evolution and microenvironment interactions in 2D and 3D space
To study the spatial interactions among cancer and non-cancer cells 1, we here examined a
cohort of 131 tumour sections from 78 cases across 6 cancer types by Visium spatial …
cohort of 131 tumour sections from 78 cases across 6 cancer types by Visium spatial …
Transient loss of Polycomb components induces an epigenetic cancer fate
V Parreno, V Loubiere, B Schuettengruber, L Fritsch… - Nature, 2024 - nature.com
Although cancer initiation and progression are generally associated with the accumulation
of somatic mutations,, substantial epigenomic alterations underlie many aspects of …
of somatic mutations,, substantial epigenomic alterations underlie many aspects of …
The Wild West of spike-in normalization
LA Patel, Y Cao, EM Mendenhall, C Benner… - Nature …, 2024 - nature.com
The proper use of spike-in normalization in ChIP-seq improves sensitivity for detecting
genome-wide changes between conditions, but improper use is common, calling some …
genome-wide changes between conditions, but improper use is common, calling some …
Targeting methionine metabolism in cancer: opportunities and challenges
P Bin, C Wang, H Zhang, Y Yan, W Ren - Trends in Pharmacological …, 2024 - cell.com
Reprogramming of methionine metabolism is a conserved hallmark of tumorigenesis.
Recent studies have revealed mechanisms regulating methionine metabolism within the …
Recent studies have revealed mechanisms regulating methionine metabolism within the …
Pharmacological activation of STAT1-GSDME pyroptotic circuitry reinforces epigenetic immunotherapy for hepatocellular carcinoma
Background Genomic screening uncovered interferon-gamma (IFNγ) pathway defects in
tumours refractory to immune checkpoint blockade (ICB). However, its non-mutational …
tumours refractory to immune checkpoint blockade (ICB). However, its non-mutational …