Current methods in structural proteomics and its applications in biological sciences

BA Manjasetty, K Büssow, S Panjikar, AP Turnbull - 3 Biotech, 2012 - Springer
A broad working definition of structural proteomics (SP) is that it is the process of the high-
throughput characterization of the three-dimensional structures of biological …

Enzymes of tyrosine catabolism in Arabidopsis thaliana

DP Dixon, R Edwards - Plant science, 2006 - Elsevier
Tyrosine catabolism is an essential pathway in animals, but its role in plants is unclear. The
first steps of tyrosine degradation lead to the formation of homogentisate. In animals this is …

A universal metabolite repair enzyme removes a strong inhibitor of the TCA cycle

AJ Zmuda, X Kang, KB Wissbroecker… - Nature …, 2024 - nature.com
A prevalent side-reaction of succinate dehydrogenase oxidizes malate to enol-oxaloacetate
(OAA), a metabolically inactive form of OAA that is a strong inhibitor of succinate …

Candidate modifier genes for the penetrance of leber's hereditary optic neuropathy

HC Cheng, SC Chi, CY Liang, JY Yu… - International Journal of …, 2022 - mdpi.com
Leber's hereditary optic neuropathy (LHON) is a maternally transmitted disease caused by
mitochondria DNA (mtDNA) mutation. It is characterized by acute and subacute visual loss …

Structural genomics of human proteins–target selection and generation of a public catalogue of expression clones

K Büssow, C Scheich, V Sievert, U Harttig… - Microbial cell …, 2005 - Springer
Background The availability of suitable recombinant protein is still a major bottleneck in
protein structure analysis. The Protein Structure Factory, part of the international structural …

Alterations of the mitochondrial proteome caused by the absence of mitochondrial DNA: A proteomic view

M Chevallet, P Lescuyer, H Diemer… - …, 2006 - Wiley Online Library
The proper functioning of mitochondria requires that both the mitochondrial and the nuclear
genome are functional. To investigate the importance of the mitochondrial genome, which …

Identification of FAH domain-containing protein 1 (FAHD1) as oxaloacetate decarboxylase

H Pircher, S von Grafenstein, T Diener… - Journal of Biological …, 2015 - ASBMB
Fumarylacetoacetate hydrolase (FAH) domain-containing proteins occur in both prokaryotes
and eukaryotes, where they carry out diverse enzymatic reactions, probably related to …

AtFAHD1a: a new player influencing seed longevity and dormancy in Arabidopsis?

D Gerna, E Arc, M Holzknecht, T Roach… - International Journal of …, 2021 - mdpi.com
Fumarylacetoacetate hydrolase (FAH) proteins form a superfamily found in Archaea,
Bacteria, and Eukaryota. However, few fumarylacetoacetate hydrolase domain (FAHD) …

Identification of human fumarylacetoacetate hydrolase domain-containing protein 1 (FAHD1) as a novel mitochondrial acylpyruvase

H Pircher, GD Straganz, D Ehehalt, G Morrow… - Journal of Biological …, 2011 - ASBMB
The human fumarylacetoacetate hydrolase (FAH) domain-containing protein 1 (FAHD1) is
part of the FAH protein superfamily, but its enzymatic function is unknown. In the quest for a …

Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH …

SJJ Brouns, TRM Barends, P Worm, J Akerboom… - Journal of molecular …, 2008 - Elsevier
The archaeon Sulfolobus solfataricus converts d-arabinose to 2-oxoglutarate by an enzyme
set consisting of two dehydrogenases and two dehydratases. The third step of the pathway …