Epistasis and adaptation on fitness landscapes

C Bank - Annual Review of Ecology, Evolution, and Systematics, 2022 - annualreviews.org
Epistasis occurs when the effect of a mutation depends on its carrier's genetic background.
Despite increasing evidence that epistasis for fitness is common, its role during evolution is …

The ecology of hybrid incompatibilities

KA Thompson, Y Brandvain… - Cold Spring …, 2023 - cshperspectives.cshlp.org
Ecologically mediated selection against hybrids, caused by hybrid phenotypes fitting poorly
into available niches, is typically viewed as distinct from selection caused by epistatic …

The evolution, evolvability and engineering of gene regulatory DNA

ED Vaishnav, CG de Boer, J Molinet, M Yassour, L Fan… - Nature, 2022 - nature.com
Mutations in non-coding regulatory DNA sequences can alter gene expression, organismal
phenotype and fitness,–. Constructing complete fitness landscapes, in which DNA …

[图书][B] Population genetics

MB Hamilton - 2021 - books.google.com
Now updated for its second edition, Population Genetics is the classic, accessible
introduction to the concepts of population genetics. Combining traditional conceptual …

Fitness variation across subtle environmental perturbations reveals local modularity and global pleiotropy of adaptation

G Kinsler, K Geiler-Samerotte, DA Petrov - Elife, 2020 - elifesciences.org
Building a genotype-phenotype-fitness map of adaptation is a central goal in evolutionary
biology. It is difficult even when adaptive mutations are known because it is hard to …

Beyond collective intelligence: Collective adaptation

M Galesic, D Barkoczi, AM Berdahl… - Journal of the …, 2023 - royalsocietypublishing.org
We develop a conceptual framework for studying collective adaptation in complex socio-
cognitive systems, driven by dynamic interactions of social integration strategies, social …

Master regulators of biological systems in higher dimensions

H Eble, M Joswig, L Lamberti… - Proceedings of the …, 2023 - National Acad Sciences
A longstanding goal of biology is to identify the key genes and species that critically impact
evolution, ecology, and health. Network analysis has revealed keystone species that …

Heterogeneity of the GFP fitness landscape and data-driven protein design

LG Somermeyer, A Fleiss, AS Mishin, NG Bozhanova… - Elife, 2022 - elifesciences.org
Studies of protein fitness landscapes reveal biophysical constraints guiding protein
evolution and empower prediction of functional proteins. However, generalisation of these …

The structure of genotype-phenotype maps makes fitness landscapes navigable

SF Greenbury, AA Louis, SE Ahnert - Nature Ecology & Evolution, 2022 - nature.com
Fitness landscapes are often described in terms of 'peaks' and 'valleys', indicating an
intuitive low-dimensional landscape of the kind encountered in everyday experience. The …

A rugged yet easily navigable fitness landscape

A Papkou, L Garcia-Pastor, JA Escudero, A Wagner - Science, 2023 - science.org
Fitness landscape theory predicts that rugged landscapes with multiple peaks impair
Darwinian evolution, but experimental evidence is limited. In this study, we used genome …