Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Mycobiome diversity: high-throughput sequencing and identification of fungi

RH Nilsson, S Anslan, M Bahram… - Nature Reviews …, 2019 - nature.com
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …

[HTML][HTML] Late Quaternary dynamics of Arctic biota from ancient environmental genomics

Y Wang, MW Pedersen, IG Alsos, B De Sanctis… - Nature, 2021 - nature.com
During the last glacial–interglacial cycle, Arctic biotas experienced substantial climatic
changes, yet the nature, extent and rate of their responses are not fully understood …

[图书][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

K Deiner, HM Bik, E Mächler, M Seymour… - Molecular …, 2017 - Wiley Online Library
The genomic revolution has fundamentally changed how we survey biodiversity on earth.
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

L Zinger, A Bonin, IG Alsos, M Bálint, H Bik… - Molecular …, 2019 - Wiley Online Library
DNA metabarcoding, especially when coupled with high‐through‐put DNA sequencing, is
currently revolutionizing our capacity to assess biodiversity across a full range of taxa and …

[HTML][HTML] Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

A Valentini, P Taberlet, C Miaud, R Civade… - Molecular …, 2016 - Wiley Online Library
Global biodiversity in freshwater and the oceans is declining at high rates. Reliable tools for
assessing and monitoring aquatic biodiversity, especially for rare and secretive species, are …

Drone-assisted collection of environmental DNA from tree branches for biodiversity monitoring

E Aucone, S Kirchgeorg, A Valentini, L Pellissier… - Science robotics, 2023 - science.org
The protection and restoration of the biosphere is crucial for human resilience and well-
being, but the scarcity of data on the status and distribution of biodiversity puts these efforts …

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions

RJ Wallace, G Sasson, PC Garnsworthy, I Tapio… - Science …, 2019 - science.org
A 1000-cow study across four European countries was undertaken to understand to what
extent ruminant microbiomes can be controlled by the host animal and to identify …