The genetic basis of epigenetic variation and its consequences for adaptation
Recent population genomic studies in plants have shed new light on natural epigenetic
variation by identifying key genetic determinants,“trans modifiers,” that influence epigenetic …
variation by identifying key genetic determinants,“trans modifiers,” that influence epigenetic …
Pennycress domestication and improvement efforts
Pennycress (Thlaspi arvense L.) is a winter annual weed species that is distributed globally
in temperate regions. The possibility of pennycress inclusion in the corn–soybean cropping …
in temperate regions. The possibility of pennycress inclusion in the corn–soybean cropping …
DNA methylation in the wild: epigenetic transgenerational inheritance can mediate adaptation in clones of wild strawberry (Fragaria vesca)
I Sammarco, B Díez Rodríguez, D Galanti… - New …, 2024 - Wiley Online Library
Due to the accelerating climate change, it is crucial to understand how plants adapt to rapid
environmental changes. Such adaptation may be mediated by epigenetic mechanisms like …
environmental changes. Such adaptation may be mediated by epigenetic mechanisms like …
Epigenomic and transcriptomic persistence of heat stress memory in strawberry (Fragaria vesca)
Background In plants, epigenetic stress memory has so far been found to be largely
transient. Here, we wanted to assess the heritability of heat stress-induced epigenetic and …
transient. Here, we wanted to assess the heritability of heat stress-induced epigenetic and …
Environmental and genealogical effects on DNA methylation in a widespread apomictic dandelion lineage
VN Ibañez, M van Antro, C Peña-Ponton… - Journal of …, 2023 - academic.oup.com
DNA methylation in plant genomes occurs in different sequences and genomic contexts that
have very different properties. DNA methylation that occurs in CG (mCG) sequence context …
have very different properties. DNA methylation that occurs in CG (mCG) sequence context …
EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics
The expanding scope and scale of next generation sequencing experiments in ecological
plant epigenetics brings new challenges for computational analysis. Existing tools built for …
plant epigenetics brings new challenges for computational analysis. Existing tools built for …
Dynamic evolution of the heterochromatin sensing histone demethylase IBM1
Heterochromatin is critical for maintaining genome stability, especially in flowering plants,
where it relies on a feedback loop involving the H3K9 methyltransferase, KRYPTONITE …
where it relies on a feedback loop involving the H3K9 methyltransferase, KRYPTONITE …
Quantifying the role of genome size and repeat content in adaptive variation and the architecture of flowering time in Amaranthus tuberculatus
JM Kreiner, S Hnatovska, JR Stinchcombe… - Plos Genetics, 2023 - journals.plos.org
Genome size variation, largely driven by repeat content, is poorly understood within and
among populations, limiting our understanding of its significance for adaptation. Here we …
among populations, limiting our understanding of its significance for adaptation. Here we …
Transposon dynamics in the emerging oilseed crop Thlaspi arvense
A Contreras-Garrido, D Galanti, A Movilli, C Becker… - Plos …, 2024 - journals.plos.org
Genome evolution is partly driven by the mobility of transposable elements (TEs) which often
leads to deleterious effects, but their activity can also facilitate genetic novelty and catalyze …
leads to deleterious effects, but their activity can also facilitate genetic novelty and catalyze …
Herbivory induced methylation changes in the Lombardy poplar: A comparison of results obtained by epiGBS and WGBS
DNA cytosine methylation is an epigenetic mechanism involved in regulation of plant
responses to biotic and abiotic stress and its ability to change can vary with the sequence …
responses to biotic and abiotic stress and its ability to change can vary with the sequence …