A history of autocatalytic sets: A tribute to Stuart Kauffman

W Hordijk - Biological Theory, 2019 - Springer
This year we celebrated Stuart Kauffman's 80th birthday. Kauffman has contributed many
original ideas to science. One of them is that of autocatalytic sets in the context of the origin …

Generating minimal living systems from non-living materials and increasing their evolutionary abilities

S Rasmussen, A Constantinescu… - … Transactions of the …, 2016 - royalsocietypublishing.org
We review lessons learned about evolutionary transitions from a bottom-up construction of
minimal life. We use a particular systemic protocell design process as a starting point for …

Self-assembly of informational polymers by templated ligation

JH Rosenberger, T Göppel, PW Kudella, D Braun… - Physical Review X, 2021 - APS
The emergence of evermore complex entities from prebiotic building blocks is a key aspect
of origins of life research. The RNA-world hypothesis posits that RNA oligomers known as …

Thermodynamic and kinetic sequence selection in enzyme-free polymer self-assembly inside a non-equilibrium RNA reactor

T Göppel, JH Rosenberger, B Altaner, U Gerland - Life, 2022 - mdpi.com
The RNA world is one of the principal hypotheses to explain the emergence of living
systems on the prebiotic Earth. It posits that RNA oligonucleotides acted as both carriers of …

Sequence selection by dynamical symmetry breaking in an autocatalytic binary polymer model

H Fellermann, S Tanaka, S Rasmussen - Physical Review E, 2017 - APS
Template-directed replication of nucleic acids is at the essence of all living beings and a
major milestone for any origin of life scenario. We present an idealized model of prebiotic …

Kinetic selection of template polymer with complex sequences

YJ Matsubara, K Kaneko - Physical review letters, 2018 - APS
The emergence and maintenance of polymers with complex sequences pose a major
question in the study of the origin of life. To answer this, we study a model polymerization …

Dynamics of Darwinian versus Baldwinian versus Lamarckian evolution

KR Thomsen, S Rasmussen - arXiv preprint arXiv:2305.00491, 2023 - arxiv.org
In recent years, studies in epigenetic inheritance in biological systems as well as studies on
evolution in non-biological systems eg, machine learning and robotics, have reopened the …

Metabolism, information, and viability in a simulated physically-plausible protocell

KR Thomsen, A Kolchinsky, S Rasmussen - arXiv preprint arXiv …, 2024 - arxiv.org
Critical experimental design issues connecting energy transduction and inheritable
information within a protocell are explored and elucidated. The protocell design utilizes a …

Templating Aggregation

PL Krapivsky, S Redner - arXiv preprint arXiv:2408.02910, 2024 - arxiv.org
We introduce an aggregation process based on\emph {templating}, where a specified
number of constituent clusters must assemble on a larger aggregate, which serves as a …

From prelife to life: a bio-inspired toy model

HJ Hilhorst - Journal of Statistical Mechanics: Theory and …, 2020 - iopscience.iop.org
We study a one-dimensional lattice of N sites each occupied by a mathematical'polymer,'that
is, is a binary random sequence of arbitrary length n, or equivalently, a rooted path of n links …