The role of RNA editing in cancer development and metabolic disorders

CP Kung, LB Maggi Jr, JD Weber - Frontiers in Endocrinology, 2018 - frontiersin.org
Numerous human diseases arise from alterations of genetic information, most notably DNA
mutations. Thought to be merely the intermediate between DNA and protein, changes in …

Perspectives on allele-specific expression

S Cleary, C Seoighe - Annual Review of Biomedical Data …, 2021 - annualreviews.org
Diploidy has profound implications for population genetics and susceptibility to genetic
diseases. Although two copies are present for most genes in the human genome, they are …

Allele-specific RNA N6-methyladenosine modifications reveal functional genetic variants in human tissues

S Cao, H Zhu, J Cui, S Liu, Y Li, J Shi, J Mo… - Genome …, 2023 - genome.cshlp.org
An intricate network of cis-and trans-elements acts on RNA N 6-methyladenosine (m6A),
which in turn may affect gene expression and, ultimately, human health. A complete …

The spatial landscape of gene expression isoforms in tissue sections

K Lebrigand, J Bergenstråhle, K Thrane… - Nucleic Acids …, 2023 - academic.oup.com
In situ capturing technologies add tissue context to gene expression data, with the potential
of providing a greater understanding of complex biological systems. However, splicing …

DEMINING: A deep learning model embedded framework to distinguish RNA editing from DNA mutations in RNA sequencing data

ZC Fu, BQ Gao, F Nan, XK Ma, L Yang - Genome Biology, 2024 - Springer
Precise calling of promiscuous adenosine-to-inosine RNA editing sites from transcriptomic
datasets is hindered by DNA mutations and sequencing/mapping errors. Here, we present a …

L-GIREMI uncovers RNA editing sites in long-read RNA-seq

Z Liu, G Quinones-Valdez, T Fu, E Huang… - Genome Biology, 2023 - Springer
Although long-read RNA-seq is increasingly applied to characterize full-length transcripts it
can also enable detection of nucleotide variants, such as genetic mutations or RNA editing …

Elimination of reference mapping bias reveals robust immune related allele-specific expression in crossbred sheep

M Salavati, SJ Bush, S Palma-Vera… - Frontiers in …, 2019 - frontiersin.org
Pervasive allelic variation at both gene and single nucleotide level (SNV) between
individuals is commonly associated with complex traits in humans and animals. Allele …

Genome-wide identification of RNA editing sites affecting intramuscular fat in pigs

L Wang, J Li, X Hou, H Yan, L Zhang, X Liu, H Gao… - Animals, 2020 - mdpi.com
Simple Summary In order to investigate RNA editing sites affecting IMF (which is associated
with pork quality and human insulin resistance.), we analyzed the transcriptome and …

[HTML][HTML] Community Structure and Biodiversity of Active Microbes in the Deep South China Sea

T Yang, Y He, M Yang, Z Gao, J Zhou, Y Wang - Microorganisms, 2024 - mdpi.com
The deep ocean harbors a group of highly diversified microbes, while our understanding of
the active microbes that are real contributors to the nutrient cycle remains limited. In this …

Detection of allosteric effects of lncRNA secondary structures altered by SNPs in human diseases

X Lu, Y Ding, Y Bai, J Li, G Zhang, S Wang… - Frontiers in Cell and …, 2020 - frontiersin.org
Recent studies have shown that structuralized long non-coding RNAs (lncRNAs) play
important roles in genetic and epigenetic processes. The spatial structures of most lncRNAs …