The role of RNA editing in cancer development and metabolic disorders
Numerous human diseases arise from alterations of genetic information, most notably DNA
mutations. Thought to be merely the intermediate between DNA and protein, changes in …
mutations. Thought to be merely the intermediate between DNA and protein, changes in …
Perspectives on allele-specific expression
Diploidy has profound implications for population genetics and susceptibility to genetic
diseases. Although two copies are present for most genes in the human genome, they are …
diseases. Although two copies are present for most genes in the human genome, they are …
Allele-specific RNA N6-methyladenosine modifications reveal functional genetic variants in human tissues
S Cao, H Zhu, J Cui, S Liu, Y Li, J Shi, J Mo… - Genome …, 2023 - genome.cshlp.org
An intricate network of cis-and trans-elements acts on RNA N 6-methyladenosine (m6A),
which in turn may affect gene expression and, ultimately, human health. A complete …
which in turn may affect gene expression and, ultimately, human health. A complete …
The spatial landscape of gene expression isoforms in tissue sections
K Lebrigand, J Bergenstråhle, K Thrane… - Nucleic Acids …, 2023 - academic.oup.com
In situ capturing technologies add tissue context to gene expression data, with the potential
of providing a greater understanding of complex biological systems. However, splicing …
of providing a greater understanding of complex biological systems. However, splicing …
DEMINING: A deep learning model embedded framework to distinguish RNA editing from DNA mutations in RNA sequencing data
ZC Fu, BQ Gao, F Nan, XK Ma, L Yang - Genome Biology, 2024 - Springer
Precise calling of promiscuous adenosine-to-inosine RNA editing sites from transcriptomic
datasets is hindered by DNA mutations and sequencing/mapping errors. Here, we present a …
datasets is hindered by DNA mutations and sequencing/mapping errors. Here, we present a …
L-GIREMI uncovers RNA editing sites in long-read RNA-seq
Although long-read RNA-seq is increasingly applied to characterize full-length transcripts it
can also enable detection of nucleotide variants, such as genetic mutations or RNA editing …
can also enable detection of nucleotide variants, such as genetic mutations or RNA editing …
Elimination of reference mapping bias reveals robust immune related allele-specific expression in crossbred sheep
Pervasive allelic variation at both gene and single nucleotide level (SNV) between
individuals is commonly associated with complex traits in humans and animals. Allele …
individuals is commonly associated with complex traits in humans and animals. Allele …
Genome-wide identification of RNA editing sites affecting intramuscular fat in pigs
L Wang, J Li, X Hou, H Yan, L Zhang, X Liu, H Gao… - Animals, 2020 - mdpi.com
Simple Summary In order to investigate RNA editing sites affecting IMF (which is associated
with pork quality and human insulin resistance.), we analyzed the transcriptome and …
with pork quality and human insulin resistance.), we analyzed the transcriptome and …
[HTML][HTML] Community Structure and Biodiversity of Active Microbes in the Deep South China Sea
The deep ocean harbors a group of highly diversified microbes, while our understanding of
the active microbes that are real contributors to the nutrient cycle remains limited. In this …
the active microbes that are real contributors to the nutrient cycle remains limited. In this …
Detection of allosteric effects of lncRNA secondary structures altered by SNPs in human diseases
X Lu, Y Ding, Y Bai, J Li, G Zhang, S Wang… - Frontiers in Cell and …, 2020 - frontiersin.org
Recent studies have shown that structuralized long non-coding RNAs (lncRNAs) play
important roles in genetic and epigenetic processes. The spatial structures of most lncRNAs …
important roles in genetic and epigenetic processes. The spatial structures of most lncRNAs …