Bottom-up coarse-graining: Principles and perspectives
Large-scale computational molecular models provide scientists a means to investigate the
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
Perspective: Advances, challenges, and insight for predictive coarse-grained models
WG Noid - The Journal of Physical Chemistry B, 2023 - ACS Publications
By averaging over atomic details, coarse-grained (CG) models provide profound
computational and conceptual advantages for studying soft materials. In particular, bottom …
computational and conceptual advantages for studying soft materials. In particular, bottom …
How water's properties are encoded in its molecular structure and energies
How are water's material properties encoded within the structure of the water molecule? This
is pertinent to understanding Earth's living systems, its materials, its geochemistry and …
is pertinent to understanding Earth's living systems, its materials, its geochemistry and …
Perspective: Coarse-grained models for biomolecular systems
WG Noid - The Journal of chemical physics, 2013 - pubs.aip.org
By focusing on essential features, while averaging over less important details, coarse-
grained (CG) models provide significant computational and conceptual advantages with …
grained (CG) models provide significant computational and conceptual advantages with …
A review of multiscale computational methods in polymeric materials
Polymeric materials display distinguished characteristics which stem from the interplay of
phenomena at various length and time scales. Further development of polymer systems …
phenomena at various length and time scales. Further development of polymer systems …
Coarse-graining errors and numerical optimization using a relative entropy framework
A Chaimovich, MS Shell - The Journal of chemical physics, 2011 - pubs.aip.org
The ability to generate accurate coarse-grained models from reference fully atomic (or
otherwise “first-principles”) ones has become an important component in modeling the …
otherwise “first-principles”) ones has become an important component in modeling the …
Coarse-grained molecular models of water: a review
KR Hadley, C McCabe - Molecular simulation, 2012 - Taylor & Francis
Coarse-grained (CG) models have proven to be very effective tools in the study of
phenomena or systems involving large time-and length-scales. By decreasing the degrees …
phenomena or systems involving large time-and length-scales. By decreasing the degrees …
The impact of resolution upon entropy and information in coarse-grained models
By eliminating unnecessary degrees of freedom, coarse-grained (CG) models tremendously
facilitate numerical calculations and theoretical analyses of complex phenomena. However …
facilitate numerical calculations and theoretical analyses of complex phenomena. However …
Cooperative multivalent receptor binding promotes exposure of the SARS-CoV-2 fusion machinery core
The molecular events that permit the spike glycoprotein of severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) to bind and enter cells are important to understand …
syndrome coronavirus 2 (SARS-CoV-2) to bind and enter cells are important to understand …
The search for the hydrophobic force law
MU Hammer, TH Anderson, A Chaimovich… - Faraday …, 2010 - pubs.rsc.org
After nearly 30 years of research on the hydrophobic interaction, the search for the
hydrophobic force law is still continuing. Indeed, there are more questions than answers …
hydrophobic force law is still continuing. Indeed, there are more questions than answers …