Protein interaction data curation: the International Molecular Exchange (IMEx) consortium
Abstract The International Molecular Exchange (IMEx) consortium is an international
collaboration between major public interaction data providers to share literature-curation …
collaboration between major public interaction data providers to share literature-curation …
Exploration of databases and methods supporting drug repurposing: a comprehensive survey
Drug development involves a deep understanding of the mechanisms of action and possible
side effects of each drug, and sometimes results in the identification of new and unexpected …
side effects of each drug, and sometimes results in the identification of new and unexpected …
The UCSC genome browser database: 2018 update
Abstract The UCSC Genome Browser (https://genome. ucsc. edu) provides a web interface
for exploring annotated genome assemblies. The assemblies and annotation tracks are …
for exploring annotated genome assemblies. The assemblies and annotation tracks are …
The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
IntAct (freely available at http://www. ebi. ac. uk/intact) is an open-source, open data
molecular interaction database populated by data either curated from the literature or from …
molecular interaction database populated by data either curated from the literature or from …
STRING v9. 1: protein-protein interaction networks, with increased coverage and integration
A Franceschini, D Szklarczyk, S Frankild… - Nucleic acids …, 2012 - academic.oup.com
Complete knowledge of all direct and indirect interactions between proteins in a given cell
would represent an important milestone towards a comprehensive description of cellular …
would represent an important milestone towards a comprehensive description of cellular …
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
D Szklarczyk, A Franceschini, M Kuhn… - Nucleic acids …, 2010 - academic.oup.com
An essential prerequisite for any systems-level understanding of cellular functions is to
correctly uncover and annotate all functional interactions among proteins in the cell. Toward …
correctly uncover and annotate all functional interactions among proteins in the cell. Toward …
MINT, the molecular interaction database: 2012 update
Abstract The Molecular INTeraction Database (MINT, http://mint. bio. uniroma2. it/mint/) is a
public repository for protein–protein interactions (PPI) reported in peer-reviewed journals …
public repository for protein–protein interactions (PPI) reported in peer-reviewed journals …
Interactome3D: adding structural details to protein networks
Network-centered approaches are increasingly used to understand the fundamentals of
biology. However, the molecular details contained in the interaction networks, often …
biology. However, the molecular details contained in the interaction networks, often …
HPIDB 2.0: a curated database for host–pathogen interactions
MG Ammari, CR Gresham, FM McCarthy, B Nanduri - Database, 2016 - academic.oup.com
Identification and analysis of host–pathogen interactions (HPI) is essential to study infectious
diseases. However, HPI data are sparse in existing molecular interaction databases …
diseases. However, HPI data are sparse in existing molecular interaction databases …
The binary protein-protein interaction landscape of Escherichia coli
SV Rajagopala, P Sikorski, A Kumar, R Mosca… - Nature …, 2014 - nature.com
Efforts to map the Escherichia coli interactome have identified several hundred
macromolecular complexes, but direct binary protein-protein interactions (PPIs) have not …
macromolecular complexes, but direct binary protein-protein interactions (PPIs) have not …