Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

S Orchard, S Kerrien, S Abbani, B Aranda, J Bhate… - Nature …, 2012 - nature.com
Abstract The International Molecular Exchange (IMEx) consortium is an international
collaboration between major public interaction data providers to share literature-curation …

Exploration of databases and methods supporting drug repurposing: a comprehensive survey

Z Tanoli, U Seemab, A Scherer… - Briefings in …, 2021 - academic.oup.com
Drug development involves a deep understanding of the mechanisms of action and possible
side effects of each drug, and sometimes results in the identification of new and unexpected …

The UCSC genome browser database: 2018 update

J Casper, AS Zweig, C Villarreal, C Tyner… - Nucleic acids …, 2018 - academic.oup.com
Abstract The UCSC Genome Browser (https://genome. ucsc. edu) provides a web interface
for exploring annotated genome assemblies. The assemblies and annotation tracks are …

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

S Orchard, M Ammari, B Aranda, L Breuza… - Nucleic acids …, 2014 - academic.oup.com
IntAct (freely available at http://www. ebi. ac. uk/intact) is an open-source, open data
molecular interaction database populated by data either curated from the literature or from …

STRING v9. 1: protein-protein interaction networks, with increased coverage and integration

A Franceschini, D Szklarczyk, S Frankild… - Nucleic acids …, 2012 - academic.oup.com
Complete knowledge of all direct and indirect interactions between proteins in a given cell
would represent an important milestone towards a comprehensive description of cellular …

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

D Szklarczyk, A Franceschini, M Kuhn… - Nucleic acids …, 2010 - academic.oup.com
An essential prerequisite for any systems-level understanding of cellular functions is to
correctly uncover and annotate all functional interactions among proteins in the cell. Toward …

MINT, the molecular interaction database: 2012 update

L Licata, L Briganti, D Peluso, L Perfetto… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Molecular INTeraction Database (MINT, http://mint. bio. uniroma2. it/mint/) is a
public repository for protein–protein interactions (PPI) reported in peer-reviewed journals …

Interactome3D: adding structural details to protein networks

R Mosca, A Céol, P Aloy - Nature methods, 2013 - nature.com
Network-centered approaches are increasingly used to understand the fundamentals of
biology. However, the molecular details contained in the interaction networks, often …

HPIDB 2.0: a curated database for host–pathogen interactions

MG Ammari, CR Gresham, FM McCarthy, B Nanduri - Database, 2016 - academic.oup.com
Identification and analysis of host–pathogen interactions (HPI) is essential to study infectious
diseases. However, HPI data are sparse in existing molecular interaction databases …

The binary protein-protein interaction landscape of Escherichia coli

SV Rajagopala, P Sikorski, A Kumar, R Mosca… - Nature …, 2014 - nature.com
Efforts to map the Escherichia coli interactome have identified several hundred
macromolecular complexes, but direct binary protein-protein interactions (PPIs) have not …