Bipartite graphs in systems biology and medicine: a survey of methods and applications

GA Pavlopoulos, PI Kontou, A Pavlopoulou… - …, 2018 - academic.oup.com
The latest advances in high-throughput techniques during the past decade allowed the
systems biology field to expand significantly. Today, the focus of biologists has shifted from …

[HTML][HTML] Single-cell transcriptomics bioinformatics and computational challenges

OB Poirion, X Zhu, T Ching, L Garmire - Frontiers in genetics, 2016 - frontiersin.org
The emerging single-cell RNA-Seq (scRNA-Seq) technology holds the promise to
revolutionize our understanding of diseases and associated biological processes at an …

An effective image representation method using kernel classification

H Wang, J Wang - 2014 IEEE 26th international conference on …, 2014 - ieeexplore.ieee.org
The learning of image representation is always the most important problem in computer
vision community. In this paper, we propose a novel image representation method by …

Cross-modal ranking with soft consistency and noisy labels for robust RGB-T tracking

C Li, C Zhu, Y Huang, J Tang… - Proceedings of the …, 2018 - openaccess.thecvf.com
Due to the complementary benefits of visible (RGB) and thermal infrared (T) data, RGB-T
object tracking attracts more and more attention recently for boosting the performance under …

RGBT salient object detection: Benchmark and a novel cooperative ranking approach

J Tang, D Fan, X Wang, Z Tu… - IEEE Transactions on …, 2019 - ieeexplore.ieee.org
Despite significant progress, image saliency detection still remains a challenging task in
complex scenes and environments. Integrating multiple different but complementary cues …

Multi-scale deep learning for the imbalanced multi-label protein subcellular localization prediction based on immunohistochemistry images

F Wang, L Wei - Bioinformatics, 2022 - academic.oup.com
Motivation The development of microscopic imaging techniques enables us to study protein
subcellular locations from the tissue level down to the cell level, contributing to the rapid …

RGBT tracking via noise-robust cross-modal ranking

C Li, Z Xiang, J Tang, B Luo… - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
Existing RGBT tracking methods usually localize a target object with a bounding box, in
which the trackers are often affected by the inclusion of background clutter. To address this …

CMsearch: simultaneous exploration of protein sequence space and structure space improves not only protein homology detection but also protein structure prediction

X Cui, Z Lu, S Wang, J Jing-Yan Wang, X Gao - Bioinformatics, 2016 - academic.oup.com
Motivation: Protein homology detection, a fundamental problem in computational biology, is
an indispensable step toward predicting protein structures and understanding protein …

Multiple kernel multivariate performance learning using cutting plane algorithm

J Wang, H Wang, Y Zhou… - 2015 IEEE International …, 2015 - ieeexplore.ieee.org
In this paper, we propose a multi-kernel classifier learning algorithm to optimize a given
nonlinear and nonsmoonth multivariate classifier performance measure. Moreover, to solve …

The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry)

M Buti, M Moretto, E Barghini, F Mascagni, L Natali… - …, 2018 - academic.oup.com
Abstract Background The genus Potentilla is closely related to that of Fragaria, the
economically important strawberry genus. Potentilla micrantha is a species that does not …