An overview of molecular modeling for drug discovery with specific illustrative examples of applications

M Aminpour, C Montemagno, JA Tuszynski - Molecules, 2019 - mdpi.com
In this paper we review the current status of high-performance computing applications in the
general area of drug discovery. We provide an introduction to the methodologies applied at …

Theoretical and computational models of biological ion channels

B Roux, T Allen, S Berneche, W Im - Quarterly reviews of biophysics, 2004 - cambridge.org
1. Introduction 172. Dynamics of many-body systems 192.1 Effective dynamics of reduced
systems 212.2 The constraint of thermodynamic equilibrium 242.3 Mean-field theories 253 …

Modeling and simulation of ion channels

C Maffeo, S Bhattacharya, J Yoo, D Wells… - Chemical …, 2012 - ACS Publications
Transport of ions through pores in membranes is a process of fundamental importance to
cell biology. In living organisms, such transport is facilitated by ion channels that utilize the …

[图书][B] Computational neuroscience: a comprehensive approach

J Feng - 2003 - taylorfrancis.com
How does the brain work? After a century of research, we still lack a coherent view of how
neurons process signals and control our activities. But as the field of computational …

Ion selectivity in potassium channels

SY Noskov, B Roux - Biophysical chemistry, 2006 - Elsevier
Potassium channels are tetrameric membrane-spanning proteins that provide a selective
pore for the conduction of K+ across the cell membranes. One of the main physiological …

An overview of sub-cellular mechanisms involved in the action of TTFields

JA Tuszynski, C Wenger, DE Friesen… - International journal of …, 2016 - mdpi.com
Long-standing research on electric and electromagnetic field interactions with biological
cells and their subcellular structures has mainly focused on the low-and high-frequency …

Ion Conduction and Selectivity in K+ Channels

B Roux - Annu. Rev. Biophys. Biomol. Struct., 2005 - annualreviews.org
▪ Abstract Potassium (K+) channels are tetrameric membrane-spanning proteins that provide
a selective pore for the conductance of K+ across the cell membranes. These channels are …

[图书][B] Handbook on clostridia

P Dürre - 2005 - taylorfrancis.com
Clostridia is one of the largest bacterial genera with an enormous potential for biotechnical
and medical applications. Despite growing scientific, medical, and industrial interest …

K+ versus Na+ ions in a K channel selectivity filter: a simulation study

IH Shrivastava, DP Tieleman, PC Biggin… - Biophysical journal, 2002 - cell.com
Molecular dynamics simulations of a bacterial potassium channel (KcsA) embedded in a
phospholipid bilayer reveal significant differences in interactions of the selectivity filter with …

[图书][B] Protein-ligand interactions: methods and applications

MA Williams, T Daviter - 2013 - Springer
Proteins are the cell's workers, their messengers and overseers. In these roles, proteins
specifically bind small molecules, nucleic acid and other protein partners. Cellular systems …