Whole-genome duplication and plant macroevolution
JW Clark, PCJ Donoghue - Trends in plant science, 2018 - cell.com
Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of
land plants. Unfortunately, the timings of WGD events are loosely constrained and …
land plants. Unfortunately, the timings of WGD events are loosely constrained and …
[HTML][HTML] Handling multi-mapped reads in RNA-seq
G Deschamps-Francoeur, J Simoneau… - Computational and …, 2020 - Elsevier
Many eukaryotic genomes harbour large numbers of duplicated sequences, of diverse
biotypes, resulting from several mechanisms including recombination, whole genome …
biotypes, resulting from several mechanisms including recombination, whole genome …
The evolution of a tropical biodiversity hotspot
The tropics are the source of most biodiversity yet inadequate sampling obscures answers to
fundamental questions about how this diversity evolves. We leveraged samples assembled …
fundamental questions about how this diversity evolves. We leveraged samples assembled …
Constructing a broadly inclusive seed plant phylogeny
Premise of the Study Large phylogenies can help shed light on macroevolutionary patterns
that inform our understanding of fundamental processes that shape the tree of life. These …
that inform our understanding of fundamental processes that shape the tree of life. These …
Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms
Inferring the intrinsic and extrinsic drivers of species diversification and phenotypic disparity
across the tree of life is a major challenge in evolutionary biology. In green plants, polyploidy …
across the tree of life is a major challenge in evolutionary biology. In green plants, polyploidy …
Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
Mosses are a highly diverse lineage of land plants, whose diversification, spanning at least
400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive …
400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive …
So many genes, so little time: a practical approach to divergence-time estimation in the genomic era
Phylogenomic datasets have been successfully used to address questions involving
evolutionary relationships, patterns of genome structure, signatures of selection, and gene …
evolutionary relationships, patterns of genome structure, signatures of selection, and gene …
Quartet sampling distinguishes lack of support from conflicting support in the green plant tree of life
Premise of the Study Phylogenetic support has been difficult to evaluate within the green
plant tree of life partly due to a lack of specificity between conflicted versus poorly informed …
plant tree of life partly due to a lack of specificity between conflicted versus poorly informed …
Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity
The Brassicaceae family comprises c. 4000 species including economically important crops
and the model plant Arabidopsis thaliana. Despite their importance, the relationships among …
and the model plant Arabidopsis thaliana. Despite their importance, the relationships among …
Plastid phylogenomic insights into the evolution of Caryophyllales
G Yao, JJ Jin, HT Li, JB Yang, VS Mandala… - Molecular Phylogenetics …, 2019 - Elsevier
The Caryophyllales includes 40 families and 12,500 species, representing a large and
diverse clade of angiosperms. Collectively, members of the clade grow on all continents and …
diverse clade of angiosperms. Collectively, members of the clade grow on all continents and …