Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review
P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …
methods and in rational drug design, the increase in approved drugs in the past decade did …
Predictive genomics: a cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data
E Wang, N Zaman, S Mcgee, JS Milanese… - Seminars in cancer …, 2015 - Elsevier
Tumor genome sequencing leads to documenting thousands of DNA mutations and other
genomic alterations. At present, these data cannot be analyzed adequately to aid in the …
genomic alterations. At present, these data cannot be analyzed adequately to aid in the …
Long noncoding RNA associated-competing endogenous RNAs in gastric cancer
T Xia, QI Liao, X Jiang, Y Shao, B Xiao, Y Xi, J Guo - Scientific reports, 2014 - nature.com
Some long noncoding RNAs (lncRNAs) play important roles in the regulation of gene
expression by acting as competing endogenous RNAs (ceRNAs). However, the roles of …
expression by acting as competing endogenous RNAs (ceRNAs). However, the roles of …
Comprehensive analysis of lung cancer pathology images to discover tumor shape and boundary features that predict survival outcome
Pathology images capture tumor histomorphological details in high resolution. However,
manual detection and characterization of tumor regions in pathology images is labor …
manual detection and characterization of tumor regions in pathology images is labor …
[HTML][HTML] Predicting clinical outcomes from large scale cancer genomic profiles with deep survival models
Translating the vast data generated by genomic platforms into accurate predictions of
clinical outcomes is a fundamental challenge in genomic medicine. Many prediction …
clinical outcomes is a fundamental challenge in genomic medicine. Many prediction …
Improved identification of concordant and discordant gene expression signatures using an updated rank-rank hypergeometric overlap approach
Recent advances in large-scale gene expression profiling necessitate concurrent
development of biostatistical approaches to reveal meaningful biological relationships. Most …
development of biostatistical approaches to reveal meaningful biological relationships. Most …
Model-based and model-free machine learning techniques for diagnostic prediction and classification of clinical outcomes in Parkinson's disease
In this study, we apply a multidisciplinary approach to investigate falls in PD patients using
clinical, demographic and neuroimaging data from two independent initiatives (University of …
clinical, demographic and neuroimaging data from two independent initiatives (University of …
Integrating feature selection and feature extraction methods with deep learning to predict clinical outcome of breast cancer
In many microarray studies, classifiers have been constructed based on gene signatures to
predict clinical outcomes for various cancer sufferers. However, signatures originating from …
predict clinical outcomes for various cancer sufferers. However, signatures originating from …
Transfer learning with convolutional neural networks for cancer survival prediction using gene-expression data
Precision medicine in oncology aims at obtaining data from heterogeneous sources to have
a precise estimation of a given patient's state and prognosis. With the purpose of advancing …
a precise estimation of a given patient's state and prognosis. With the purpose of advancing …
A network based method for analysis of lncRNA-disease associations and prediction of lncRNAs implicated in diseases
Increasing evidence has indicated that long non-coding RNAs (lncRNAs) are implicated in
and associated with many complex human diseases. Despite of the accumulation of lncRNA …
and associated with many complex human diseases. Despite of the accumulation of lncRNA …