MirDIP 5.2: tissue context annotation and novel microRNA curation

AC Hauschild, C Pastrello, GKA Ekaputeri… - Nucleic Acids …, 2023 - academic.oup.com
MirDIP is a well-established database that aggregates microRNA-gene human interactions
from multiple databases to increase coverage, reduce bias, and improve usability by …

Machine learning strategies in microRNA research: bridging genome to phenome

S Daniel Thomas, K Vijayakumar, L John… - OMICS: A Journal of …, 2024 - liebertpub.com
MicroRNAs (miRNAs) have emerged as a prominent layer of regulation of gene expression.
This article offers the salient and current aspects of machine learning (ML) tools and …

Prediction models based on miRNA-disease relationship: Diagnostic relevance to multiple diseases including COVID-19

V Sharma, AK Sharma, M Yadav… - Current …, 2023 - ingentaconnect.com
Background: Small, non-coding microRNAs, usually of 20-25 nucleotides, are known to
regulate the post-transcriptional gene expression, which has a significant role in human …

[HTML][HTML] MicroRNA-9a-5p alleviates ischemia injury after focal cerebral ischemia of the rat by targeting ATG5-mediated autophagy

N Wang, L Yang, H Zhang, X Lu, J Wang… - Cellular Physiology and …, 2018 - karger.com
Background/Aims: Previous studies have suggested that autophagy is activated in distinct
cerebrovascular diseases, including stroke. However, the underlying regulatory mechanism …

mintRULS: Prediction of miRNA–mRNA Target Site Interactions Using Regularized Least Square Method

S Shakyawar, S Southekal, C Guda - Genes, 2022 - mdpi.com
Identification of miRNA–mRNA interactions is critical to understand the new paradigms in
gene regulation. Existing methods show suboptimal performance owing to inappropriate …

Transcriptomic Analyses Reveal 2 and 4 Family Members of Cytochromes P450 (CYP) Involved in LPS Inflammatory Response in Pharynx of Ciona robusta

A Vizzini, A Bonura, L La Paglia, A Fiannaca… - International Journal of …, 2021 - mdpi.com
Cytochromes P450 (CYP) are enzymes responsible for the biotransformation of most
endogenous and exogenous agents. The expression of each CYP is influenced by a unique …

[PDF][PDF] BioGraphDB: a new GraphDB collecting heterogeneous data for bioinformatics analysis

A Fiannaca, M La Rosa, L La Paglia… - Proceedings of …, 2016 - researchgate.net
Current bioinformatics databases provide huge amounts of different biological entities such
as genes, proteins, diseases, microRNA, annotations, literature references. In many case …

Transcriptomic and Bioinformatic Analyses Identifying a Central Mif-Cop9-Nf-kB Signaling Network in Innate Immunity Response of Ciona robusta

L La Paglia, M Vazzana, M Mauro, F Dumas… - International Journal of …, 2023 - mdpi.com
The Ascidian C. robusta is a powerful model for studying innate immunity. LPS induction
activates inflammatory-like reactions in the pharynx and the expression of several innate …

ceRNA Network Regulation of TGF-β, WNT, FOXO, Hedgehog Pathways in the Pharynx of Ciona robusta

A Vizzini, A Bonura, L La Paglia, A Fiannaca… - International Journal of …, 2021 - mdpi.com
The transforming growth factor-β (TGF-β) family of cytokines performs a multifunctional
signaling, which is integrated and coordinated in a signaling network that involves other …

Bioinformatics analysis of mRNA and miRNA microarray to identify the key miRNA-mRNA pairs in cisplatin-resistant ovarian cancer

B Xue, S Li, X Jin, L Liu - BMC cancer, 2021 - Springer
Background Ovarian cancer (OC) is a gynecological malignancy with the highest mortality
rate. Cisplatin (DDP) based chemotherapy is a standard strategy for ovarian cancer. Despite …