MirDIP 5.2: tissue context annotation and novel microRNA curation
AC Hauschild, C Pastrello, GKA Ekaputeri… - Nucleic Acids …, 2023 - academic.oup.com
MirDIP is a well-established database that aggregates microRNA-gene human interactions
from multiple databases to increase coverage, reduce bias, and improve usability by …
from multiple databases to increase coverage, reduce bias, and improve usability by …
Machine learning strategies in microRNA research: bridging genome to phenome
S Daniel Thomas, K Vijayakumar, L John… - OMICS: A Journal of …, 2024 - liebertpub.com
MicroRNAs (miRNAs) have emerged as a prominent layer of regulation of gene expression.
This article offers the salient and current aspects of machine learning (ML) tools and …
This article offers the salient and current aspects of machine learning (ML) tools and …
Prediction models based on miRNA-disease relationship: Diagnostic relevance to multiple diseases including COVID-19
Background: Small, non-coding microRNAs, usually of 20-25 nucleotides, are known to
regulate the post-transcriptional gene expression, which has a significant role in human …
regulate the post-transcriptional gene expression, which has a significant role in human …
[HTML][HTML] MicroRNA-9a-5p alleviates ischemia injury after focal cerebral ischemia of the rat by targeting ATG5-mediated autophagy
N Wang, L Yang, H Zhang, X Lu, J Wang… - Cellular Physiology and …, 2018 - karger.com
Background/Aims: Previous studies have suggested that autophagy is activated in distinct
cerebrovascular diseases, including stroke. However, the underlying regulatory mechanism …
cerebrovascular diseases, including stroke. However, the underlying regulatory mechanism …
mintRULS: Prediction of miRNA–mRNA Target Site Interactions Using Regularized Least Square Method
Identification of miRNA–mRNA interactions is critical to understand the new paradigms in
gene regulation. Existing methods show suboptimal performance owing to inappropriate …
gene regulation. Existing methods show suboptimal performance owing to inappropriate …
Transcriptomic Analyses Reveal 2 and 4 Family Members of Cytochromes P450 (CYP) Involved in LPS Inflammatory Response in Pharynx of Ciona robusta
A Vizzini, A Bonura, L La Paglia, A Fiannaca… - International Journal of …, 2021 - mdpi.com
Cytochromes P450 (CYP) are enzymes responsible for the biotransformation of most
endogenous and exogenous agents. The expression of each CYP is influenced by a unique …
endogenous and exogenous agents. The expression of each CYP is influenced by a unique …
[PDF][PDF] BioGraphDB: a new GraphDB collecting heterogeneous data for bioinformatics analysis
Current bioinformatics databases provide huge amounts of different biological entities such
as genes, proteins, diseases, microRNA, annotations, literature references. In many case …
as genes, proteins, diseases, microRNA, annotations, literature references. In many case …
Transcriptomic and Bioinformatic Analyses Identifying a Central Mif-Cop9-Nf-kB Signaling Network in Innate Immunity Response of Ciona robusta
L La Paglia, M Vazzana, M Mauro, F Dumas… - International Journal of …, 2023 - mdpi.com
The Ascidian C. robusta is a powerful model for studying innate immunity. LPS induction
activates inflammatory-like reactions in the pharynx and the expression of several innate …
activates inflammatory-like reactions in the pharynx and the expression of several innate …
ceRNA Network Regulation of TGF-β, WNT, FOXO, Hedgehog Pathways in the Pharynx of Ciona robusta
A Vizzini, A Bonura, L La Paglia, A Fiannaca… - International Journal of …, 2021 - mdpi.com
The transforming growth factor-β (TGF-β) family of cytokines performs a multifunctional
signaling, which is integrated and coordinated in a signaling network that involves other …
signaling, which is integrated and coordinated in a signaling network that involves other …
Bioinformatics analysis of mRNA and miRNA microarray to identify the key miRNA-mRNA pairs in cisplatin-resistant ovarian cancer
B Xue, S Li, X Jin, L Liu - BMC cancer, 2021 - Springer
Background Ovarian cancer (OC) is a gynecological malignancy with the highest mortality
rate. Cisplatin (DDP) based chemotherapy is a standard strategy for ovarian cancer. Despite …
rate. Cisplatin (DDP) based chemotherapy is a standard strategy for ovarian cancer. Despite …